fix: Adds missing sub-path in JobnFileTransfer (and updates Python ve… #299
Workflow file for this run
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| --- | |
| name: build dev | |
| # Actions that take place after every commit to 'dev' branches | |
| # Anything that's not staging or production. | |
| # | |
| # If a DOCKERHUB_USERNAME secret is defined the image is pushed. | |
| # --------------- | |
| # Control secrets | |
| # --------------- | |
| # | |
| # At the GitHub 'organisation' or 'project' level you are expected to | |
| # have the following GitHub 'Repository Secrets' defined | |
| # (i.e. via 'Settings -> Secrets'): - | |
| # | |
| # BE_NAMESPACE optional - default xchem | |
| # | |
| # DOCKERHUB_USERNAME optional | |
| # DOCKERHUB_TOKEN optional - required if DOCKERHUB_USERNAME | |
| # | |
| # ----------- | |
| # Environment (GitHub Environments) | |
| # ----------- | |
| # | |
| # (none) | |
| on: | |
| push: | |
| branches-ignore: | |
| - 'staging' | |
| - 'production' | |
| tags-ignore: | |
| - '**' | |
| env: | |
| # The following 'defaults' are used in the 'Initialise workflow variables' step, | |
| # which creates 'outputs' for use in steps and jobs that follow it. | |
| # The values set here are used unless a matching secret is found. | |
| # Secrets are the way users dynamically control the behaviour of this Action. | |
| # | |
| # For Jobs conditional on the presence of a secret see this Gist... | |
| # https://gist.github.com/jonico/24ffebee6d2fa2e679389fac8aef50a3 | |
| BE_NAMESPACE: xchem | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| push: ${{ steps.vars.outputs.push }} | |
| steps: | |
| - name: Inject slug/short variables | |
| uses: rlespinasse/[email protected] | |
| - name: Initialise workflow variables | |
| id: vars | |
| env: | |
| DOCKERHUB_USERNAME: ${{ secrets.DOCKERHUB_USERNAME }} | |
| TRIGGER_DOWNSTREAM: ${{ secrets.TRIGGER_DOWNSTREAM }} | |
| run: | | |
| # BE_NAMESPACE | |
| BE_NAMESPACE="${{ env.BE_NAMESPACE }}" | |
| if [ -n "${{ secrets.BE_NAMESPACE }}" ]; then BE_NAMESPACE="${{ secrets.BE_NAMESPACE }}"; fi | |
| echo BE_NAMESPACE=${BE_NAMESPACE} | |
| echo "BE_NAMESPACE=${BE_NAMESPACE}" >> $GITHUB_OUTPUT | |
| # Do we push, i.e. is DOCKERHUB_USERNAME defined? | |
| echo push=${{ env.DOCKERHUB_USERNAME != '' }} | |
| echo "push=${{ env.DOCKERHUB_USERNAME != '' }}" >> $GITHUB_OUTPUT | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Lint Dockerfile | |
| uses: hadolint/[email protected] | |
| with: | |
| dockerfile: Dockerfile | |
| - name: Set up Python | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.10' | |
| - name: Compile requirements.txt | |
| run: | | |
| pip install --upgrade pip | |
| pip install poetry==1.5.1 | |
| poetry export --without-hashes --without dev --output requirements.txt | |
| - name: Build | |
| uses: docker/build-push-action@v4 | |
| with: | |
| context: . | |
| tags: ${{ steps.vars.outputs.BE_NAMESPACE }}/fragalysis-backend:${{ env.GITHUB_REF_SLUG }} | |
| # DEVELOPER TESTING DISABLED UNTIL MODEL-REFACTORING IS COMPLETE | |
| # | |
| # - name: Test | |
| # run: > | |
| # docker-compose -f docker-compose.test.yml up | |
| # --build | |
| # --exit-code-from tests | |
| # --abort-on-container-exit | |
| # env: | |
| # BE_NAMESPACE: ${{ steps.vars.outputs.BE_NAMESPACE }} | |
| # BE_TAG: ${{ env.GITHUB_REF_SLUG }} | |
| - name: Login to DockerHub | |
| if: steps.vars.outputs.push == 'true' | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Push | |
| if: steps.vars.outputs.push == 'true' | |
| run: docker push ${{ steps.vars.outputs.BE_NAMESPACE }}/fragalysis-backend:${{ env.GITHUB_REF_SLUG }} |