V1.8 pre #25
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V1.8 pre #25
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… folder doublets has been renamed to doublet_detection
…ignemt and clustering_and_integration respectively
…er_data.py has been modified to correctly transfer results into handover/Summary_plots properly
…hanges are required to remove existing_cellsnp only if it has a readme.md
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The folders doublets, celltype and clustering have been renamed to doublet_detection, celltype_assignemt and clustering_and_integration respectively.
The folder merged_h5ad has been moved to the handover folder, and the folder plots has been moved to the clustering_and_integration folder.
transfer_data.py has been modified to correctly transfer results to handover/Summary_plots.
PR checklist
nf-core lint).nextflow run . -profile test,docker).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).