Added code to change float to int

wslh-bio · Dec 9, 2024 · e986b07 · e986b07
1 parent 2d42cf0
commit e986b07
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/bin/dryad_summary.py b/bin/dryad_summary.py
@@ -42,6 +42,9 @@ def join_dfs_no_quast(df_log, df_excluded):
     # Begin joining 
     df_log_excluded = pd.merge(df_log, df_excluded, on='Sample', how='outer')
 
+    # Change float to int
+    df[['Sequence Length','Cluster Coverage (bps)']] = df[['Sequence Length','Cluster Coverage (bps)']].astype(int)
+
     # Rename and Drop columns
     df_log_excluded = df_log_excluded.rename(columns={'excluded_from_analysis':'Excluded from Parsnp\'s analysis'})
 
@@ -58,6 +61,9 @@ def join_dfs_with_quast(df_log, df_excluded, df_quast):
     df_log_excluded = pd.merge(df_log, df_excluded, on='Sample', how='outer')
     df_log_excluded_quast = pd.merge(df_log_excluded, df_quast, on='Sample', how='outer')
 
+    # Change float to int
+    df[['Sequence Length','Cluster Coverage (bps)','Contigs','N50']] = df[['Sequence Length','Cluster Coverage (bps)','Contigs','N50']].astype(int)
+
     # Rename and Drop columns
     df_log_excluded_quast = df_log_excluded_quast.rename(columns={'excluded_from_analysis':'Excluded from Parsnp\'s analysis'})
     df_log_excluded_quast = df_log_excluded_quast.drop('Assembly Length (bp)', axis=1)