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Fixed wording for output in alignment based
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evagunawan committed Dec 3, 2024
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Expand Up @@ -180,7 +180,7 @@ Notable output files:
| parsnp.snps.mblocks.treefile | Maximum likelihood phylogenetic tree |
| aligner_log.tsv | Coverage statistics calculated by parsnp |
| excluded_samples_from_parsnp.txt | Lists samples that were excluded from parsnp's analysis due to a MUMi distance > 0.01 |

| dryad_summary.csv | Summarizes quast report, if run, and core genome percentages |

*QUAST results will not be present if `--skip_quast` was used.

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