Merge pull request #27 from william-hutchison/clean-code

Clean code

.Rbuildignore

@@ -0,0 +1,3 @@
+^\.github$
+^LICENSE\.md$
+^NEWS\.md$

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: tidySpatialExperiment
-Title: Brings SpatialExperiment to the tidyverse 
-Version: 0.99.20
+Title: SpatialExperiment with tidy principles 
+Version: 0.99.21
 Authors@R: c(
     person("William", "Hutchison", email = "[email protected]", role = c("aut", "cre"), 
            comment = c(ORCID = "0009-0001-6242-4269")),
@@ -11,7 +11,7 @@ Description: tidySpatialExperiment provides a bridge between the SpatialExperime
     tidyverse ecosystem. It creates an invisible layer that allows you to interact with a 
     SpatialExperiment object as if it were a tibble; enabling the use of functions from dplyr, 
     tidyr, ggplot2 and plotly. But, underneath, your data remains a SpatialExperiment object.
-License: GPL-3
+License: GPL (>= 3)
 Depends:
     R (>= 4.3.0),
     SpatialExperiment,
@@ -30,7 +30,6 @@ Imports:
     dplyr,
     tidyr,
     ggplot2,
-    magrittr,
     rlang,
     purrr,
     stringr,

NAMESPACE

@@ -42,7 +42,6 @@ importFrom(SummarizedExperiment,colData)
 importFrom(dplyr,add_count)
 importFrom(dplyr,arrange)
 importFrom(dplyr,count)
-importFrom(dplyr,distinct_at)
 importFrom(dplyr,filter)
 importFrom(dplyr,full_join)
 importFrom(dplyr,inner_join)
@@ -53,11 +52,8 @@ importFrom(dplyr,right_join)
 importFrom(dplyr,sample_frac)
 importFrom(dplyr,sample_n)
 importFrom(dplyr,select)
-importFrom(dplyr,select_if)
 importFrom(fansi,strwrap_ctl)
 importFrom(ggplot2,aes)
-importFrom(magrittr,equals)
-importFrom(magrittr,set_rownames)
 importFrom(methods,callNextMethod)
 importFrom(methods,getMethod)
 importFrom(methods,is)
@@ -66,11 +62,11 @@ importFrom(pillar,get_extent)
 importFrom(pillar,style_subtle)
 importFrom(pillar,tbl_format_header)
 importFrom(pkgconfig,get_config)
-importFrom(purrr,as_mapper)
 importFrom(purrr,imap)
 importFrom(purrr,map)
 importFrom(purrr,map2)
 importFrom(purrr,map_chr)
+importFrom(purrr,pluck)
 importFrom(purrr,reduce)
 importFrom(purrr,when)
 importFrom(rlang,":=")
@@ -81,9 +77,6 @@ importFrom(rlang,expr)
 importFrom(rlang,flatten_if)
 importFrom(rlang,is_spliced)
 importFrom(rlang,names2)
-importFrom(rlang,quo_is_null)
-importFrom(rlang,quo_is_symbol)
-importFrom(rlang,quo_is_symbolic)
 importFrom(rlang,quo_name)
 importFrom(rlang,quo_squash)
 importFrom(rlang,sym)
@@ -100,6 +93,7 @@ importFrom(tidyr,separate)
 importFrom(tidyr,spread)
 importFrom(tidyr,unite)
 importFrom(tidyr,unnest)
+importFrom(tidyselect,all_of)
 importFrom(tidyselect,eval_select)
 importFrom(ttservice,bind_cols)
 importFrom(ttservice,bind_rows)

NEWS.md

@@ -20,7 +20,7 @@
 # tidySpatialExperiment 0.99.13
 
 * Removed unneeded dependencies. 
-* Updated README and vignette material.
+* Improved README and vignette material.
 
 # tidySpatialExperiment 0.99.14
 
@@ -44,8 +44,16 @@
 
 # tidySpatialExperiment 0.99.19
 
-* Improve code style.
+* Improved code style.
 
 # tidySpatialExperiment 0.99.20
 
-* tidySpatialExperiment is now in Bioconductor. Documentation has been updated accordingly. 
+* tidySpatialExperiment is now in Bioconductor! Documentation has been updated accordingly. 
+
+# tidySpatialExperiment 0.99.21
+
+* Improved code style.
+* Removed magrittr pipe. 
+* Removed unneeded dependencies. 
+* Improved README and vignette material.
+* Bug fixes.