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Release/0.8.3#293

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mostafakalhor merged 34 commits intomainwilhelm-lab/oktoberfest:mainfrom release/0.8.3wilhelm-lab/oktoberfest:release/0.8.3Copy head branch name to clipboardOct 30, 2024

+462,592-662

Commits

Commits on Apr 18, 2024

• annotate_spectral_library_xl Finished annotating

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• annotaton part is done , working on koina part

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Commits on Apr 19, 2024

• ce calibration is working

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• feature generation is done - working on percoltor part

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Commits on Apr 21, 2024

• rescoring is working on csm level - all features and numThreads must be checked

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Commits on Apr 23, 2024

• plots are working

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Commits on Apr 26, 2024

• xl_fdr of uxls fixed

  mostafakalhor

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Commits on Apr 27, 2024

• seems scout is working

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Commits on Oct 11, 2024

• Merge pull request #285 from wilhelm-lab/patch/fix_documentation

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Commits on Oct 15, 2024

• paper results is based on this version

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• Merge branch 'development' into feature/xl

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  7a3a676

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• merging last version of development to xl/feature and fix conflicts

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Commits on Oct 16, 2024

• fixing conflicts

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Commits on Oct 17, 2024

• adding func to provide xifdr input

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Commits on Oct 18, 2024

• input xifdr function for xisearch results is working

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Commits on Oct 25, 2024

• generating xifdr input is working for both xisearch and scout

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  8c84612

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• fixed unit tests

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• linting

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Commits on Oct 27, 2024

• updated deps to new io und fundamentals versions

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• cleanup runner for xl code

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• added runner unit test and required data for xl

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  80acbc1

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• fixed docstrings

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• fixed pre-commits error

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• fixed typeguard issues

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Commits on Oct 28, 2024

• fixed mypy

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• reorder using black

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• fix mocking for predictions

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  95a6bc3

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• fixed test_runner.py

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  197e0c5

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• fixed pre commit

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• do not run percolator on xl peptide level

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• updated timeout to seconds instead of milliseconds

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Commits on Oct 29, 2024

• efficient prediction of peptide b

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• Merge pull request #291 from wilhelm-lab/feature/xl

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• Bump version from 0.8.2 to 0.8.3

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