add documentation for the cit pipeline config

wilhelm-lab · Oct 10, 2024 · 5734668 · 5734668
1 parent fcbea30
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diff --git a/docs/_static/custom_cookietemple.css b/docs/_static/custom_cookietemple.css
@@ -75,7 +75,7 @@ table.align-default {
     padding-left: 50px;
 }
 
-.ptm-config-table tbody tr:not(:first-child) td:nth-child(1) {
+.ptm-config-table tbody tr:nth-last-child(-n + 3) td:nth-child(1) {
     padding-left: 50px;
 }
 

diff --git a/docs/config.rst b/docs/config.rst
@@ -173,11 +173,11 @@ Applicable to local intensity prediction
 .. table::
    :class: fixed-table
 
-    +----------------------------+--------------------------------------------------------------------------------------------------------------------------------------------------------------------+
-    | Parameter                  | Description                                                                                                                                                        |
-    +============================+====================================================================================================================================================================+
-    | dlomixInferenceBatchSize | Batch size to use for local inference with DLomix                                                                                                                    |
-    +----------------------------+--------------------------------------------------------------------------------------------------------------------------------------------------------------------+
+   +----------------------------+--------------------------------------------------------------------------------------------------------------------------------------------------------------------+
+   | Parameter                  | Description                                                                                                                                                        |
+   +============================+====================================================================================================================================================================+
+   | dlomixInferenceBatchSize   | Batch size to use for local inference with DLomix                                                                                                                  |
+   +----------------------------+--------------------------------------------------------------------------------------------------------------------------------------------------------------------+
 
 Applicable to transfer/refinement learning
 ------------------------------------------

diff --git a/pyproject.toml b/pyproject.toml
@@ -29,7 +29,7 @@ matplotlib = "^3.6.3"
 mokapot = ">=0.9.1,<0.11.0"
 numpy = ">=1.20,<1.25"
 seaborn = ">=0.12.2,<0.14.0"
-spectrum_fundamentals = ">=0.7.4,<0.8.0"
+spectrum_fundamentals = ">=0.7.6,<0.8.0"
 spectrum-io = ">=0.6.3,<0.7.0"
 picked_group_fdr = ">=0.7.1"