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add rodent census 525 data [minor] #519

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merged 6 commits into from
Mar 5, 2024
Merged

add rodent census 525 data [minor] #519

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14c08f5
add rodent census 525 data [minor]
patdumandan Jan 30, 2024
c8a807c
Merge branch 'main' into rodents-525
patdumandan Jan 30, 2024
23433e4
add rodent census 525 data [minor]
patdumandan Jan 30, 2024
70ee4e8
re-run workflow [minor]
patdumandan Feb 8, 2024
2f688ba
Merge branch 'rodents-525' of https://github.com/weecology/PortalData…
patdumandan Feb 8, 2024
f29f7c0
change C2DD92 species ID in 525 [minor]
patdumandan Feb 29, 2024
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3 changes: 1 addition & 2 deletions DataCleaningScripts/new_rodent_data.r
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Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ source('DataCleaningScripts/clean_pit_tags.R')
# New file to be checked
##############################################################################

newperiod = '524'
newperiod = '525'

filepath = "D:\\Dropbox\\Portal\\PORTAL_primary_data\\Rodent\\Raw_data\\New_data"

Expand Down Expand Up @@ -58,7 +58,6 @@ speciesnorms$wgt.max = NA
speciesnorms$hfl.min = NA
speciesnorms$hfl.max = NA


for (i in 1:nrow(speciesnorms)) {

this.sp = filter(olddat, species == speciesnorms$species[i])
Expand Down
158 changes: 151 additions & 7 deletions Rodents/Portal_rodent.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -75943,7 +75943,7 @@
76046,6,20,2023,519,24,,74,"DM","M","Z",,,,,,,34,36,"7A097C",,,,,,,,,,,
76047,6,20,2023,519,19,,45,"OT","F","Z",,,,,,,20,21,"7970B1","*",,,,,,,,,,
76048,6,20,2023,519,19,,61,"PP","F",,,,,,"E",,21,16,"79C897",,,,,,,,,,,
76049,6,20,2023,519,19,,36,"PB","F","Z",,,,,,,27,35,"796FD8",,,,,,,,,,,
76049,6,20,2023,519,19,,36,"PB","M","Z",,,,,,,27,35,"796FD8",,,,,,,,,,,
76050,6,20,2023,519,19,,13,"PB","F",,,,,,"E",,27,33,"796383",,,,,,,,,,,
76051,6,20,2023,519,19,,12,"RM","F","Z",,,,,,,16,8,"79C701","*",,,,,,,,,,
76052,6,20,2023,519,19,,57,"PB","M",,,"M",,,,,24,33,"05C387",,,,,,,,,,,
Expand Down Expand Up @@ -76473,7 +76473,7 @@
76576,7,19,2023,520,17,,31,"DM","F",,,,,"P","B",,37,52,"C2B4A7",,,,,,,,,,,
76577,7,19,2023,520,17,,72,"PP","F","Z",,,,,,,20,11,"7A0406","*",,,,,,,,,,
76578,7,19,2023,520,17,,61,"DM","F","Z",,,,,,,35,40,"05C448",,,,,,,,,,,
76579,7,19,2023,520,17,,23,"DM","M","Z",,,,,,,35,40,"05C383",,,,,,,,,,,
76579,7,19,2023,520,17,,23,"DM","F","Z",,,,,,,35,40,"05C383",,,,,,,,,,,
76580,7,19,2023,520,17,,17,"DM","M",,,"S",,,,,35,45,"799F37",,,,,,,,,,,
76581,7,19,2023,520,17,,41,"PP","F",,,,,,"E",,20,16,"BFD9CF",,,,,,,,,,,
76582,7,19,2023,520,17,,26,"DM","F",,,,,,"E",,35,43,"C2B0A1",,,,,,,,,,,
Expand Down Expand Up @@ -76532,7 +76532,7 @@
76635,7,19,2023,520,13,,76,"PP","F","Z",,,,,,,21,19,"05C456",,,,,,,,,,,
76636,7,19,2023,520,13,,45,"DO","F","Z",,,,,,,35,37,"056726",,,,,,,,,,,
76637,7,19,2023,520,8,,76,"PP","F","Z",,,,,,,20,13,"7970EB","*",,,,,,,,,,
76638,7,19,2023,520,8,1,54,"PB","F","Z",,,,,,,25,,"79D635",,,,,,,,,"E",,
76638,7,19,2023,520,8,1,54,"PB","M","Z",,,,,,,25,,"79D635",,,,,,,,,"E",,
76639,7,19,2023,520,8,,23,"PB","F","Z",,,,,,,25,30,"05BC89",,,,,,,,,,,
76640,7,19,2023,520,8,,51,"PB","F","Z",,,,,,,25,29,"793D8C",,,,,,,,,,,
76641,7,19,2023,520,8,,12,"PB","M","Z",,,,,,,25,38,"79D807",,,,,,,,,,,
Expand Down Expand Up @@ -76980,7 +76980,7 @@
77083,10,14,2023,522,6,,66,"PP","M","Z",,,,,,,21,19,"79D7FF",,,,,,,,,,,
77084,10,14,2023,522,6,,61,"OT","F","Z",,,,,,,18,21,"797287",,,,,,,,,,,
77085,10,14,2023,522,6,,71,"PB","F","Z",,,,,,,25,26,"05BBF0","*",,,,,,,,,,
77086,10,14,2023,522,24,,26,"OT","F","Z",,,,,,,18,25,"05C4BE","*",,,,,,,,,,
77086,10,14,2023,522,24,,26,"OT","M","Z",,,,,,,18,25,"05C4BE","*",,,,,,,,,,
77087,10,14,2023,522,24,,32,"PE","F","Z",,,,,,,20,21,"05BBEF","*",,,,,,,,,,
77088,10,14,2023,522,24,,35,"DM","F","Z",,,,,,,35,40,"BF1937",,,,,,,,,,,
77089,10,14,2023,522,24,,17,"OT","F","Z",,,,,,,18,26,"793CBC",,,,,,,,,,,
Expand Down Expand Up @@ -77325,7 +77325,7 @@
77428,11,11,2023,523,22,,27,"PB","F","Z",,,,,,,25,25,"7A0B68",,,,,,,,,,,
77429,11,11,2023,523,22,,12,"PB","F","Z",,,,,,,25,23,"79E46D",,,,,,,,,,,
77430,11,11,2023,523,22,,26,"PB","F","Z",,,,,,,25,26,"BF1684",,,,,,,,,,,
77431,11,11,2023,523,22,,13,"RO","M","Z",,,,,,,15,10,"05C48B",,,,,,,,,,,
77431,11,11,2023,523,22,,13,"RM","M","Z",,,,,,,15,10,"05C48B",,,,,,,,,,,
77432,11,11,2023,523,1,,55,"DM","M","Z",,,,,,,32,43,,,,,,,,,,"R",,
77433,11,11,2023,523,20,,51,"DO","F","Z",,,,,,,32,39,,,,,,,,,,"R",,
77434,11,11,2023,523,20,,35,"DO","F","Z",,,,,,,35,33,,,,,,,,,,"R",,
Expand Down Expand Up @@ -77403,7 +77403,7 @@
77506,11,12,2023,523,7,,31,"OT","F","Z",,,,,,,19,20,"05BC1B",,,,,,,,,"D",,
77507,11,12,2023,523,7,,57,"PB","F",,,,,"P",,,26,30,"BF0D26","*",,,,,,,,,,
77508,11,12,2023,523,7,,37,"PM","F","Z",,,,,,,21,22,"05C49D",,,,,,,,,,,
77509,11,12,2023,523,7,3,71,"DM","F","Z",,,,,,,34,36,"79FB3E",,,,,,,,,,,
77509,11,12,2023,523,7,3,71,"DM","M","Z",,,,,,,34,36,"79FB3E",,,,,,,,,,,
77510,11,12,2023,523,7,3,61,"DO","M","Z",,,,,,,35,41,"797C2A",,,,,,,,,,,
77511,11,12,2023,523,7,,76,"DM","M","Z",,,,,,,35,41,"C2DBFC","*",,,,,,,,,,
77512,11,12,2023,523,7,3,71,"DM","F","Z",,,,,,,34,39,"05C453",,,,,,,,,,,
Expand Down Expand Up @@ -77471,7 +77471,7 @@
77574,12,9,2023,524,6,,22,"OT","F","Z",,,,,,,19,19,"05C496",,,,,,,,,,,
77575,12,9,2023,524,6,,52,"DM","F","Z",,,,,,,35,40,"7969A2",,,,,,,,,,,
77576,12,9,2023,524,6,,71,"DM","M","Z",,,,,,,35,39,"4B6FC4",,,,,,,,,,,
77577,12,9,2023,524,24,,17,"RF","F","Z",,,,,,,20,18,"05BC9D","*",,,,,,,,,,
77577,12,9,2023,524,24,,17,"PE","F","Z",,,,,,,20,18,"05BC9D","*",,,,,,,,,,
77578,12,9,2023,524,24,,22,"DO","F","Z",,,,,,,35,50,"7972C4",,,,,,,,,,,
77579,12,9,2023,524,24,,54,"DM","F","Z",,,,,,,35,37,"BF1937",,,,,,,,,,,
77580,12,9,2023,524,24,,21,"OT","F","Z",,,,,,,19,21,"05BC0F",,,,,,,,,,,
Expand Down Expand Up @@ -77603,3 +77603,147 @@
77706,12,10,2023,524,9,,47,"OT","F","Z",,,,,,,19,25,"05C48C",,,,,,,,,"R",,
77707,12,10,2023,524,9,,62,"RM","M","Z",,,,,,,15,10,,,,,,,,,,"R",,
77708,12,10,2023,524,3,,56,"DM","F","Z",,,,,,,33,40,,,,,,,,,,"R",,
77709,1,6,2024,525,4,,56,"DS","M","Z",,,,,,,50,121,"05BCD0",,,,,,,,,,,
77710,1,6,2024,525,4,,13,"DM","F","Z",,,,,,,35,33,"05BC09",,,,,,,,,,,
77711,1,6,2024,525,4,,31,"OT","F","Z",,,,,,,20,21,"05BC27",,,,,,,,,,,
77712,1,6,2024,525,4,,47,"DM","F","Z",,,,,,,35,36,"79D7C7",,,,,,,,,,,
77713,1,6,2024,525,4,,36,"DM","F","Z",,,,,,,31,42,"799ECB",,,,,,,,,,,
77714,1,6,2024,525,4,,34,"DM","M","Z",,,,,,,35,41,"05BC9B",,,,,,,,,,,
77715,1,6,2024,525,4,,72,"DM","M","Z",,,,,,,35,41,"799E9D",,,,,,,,,,,
77716,1,6,2024,525,4,,77,"PB","F","Z",,,,,,,26,21,"79D513",,,,,,,,,,,
77717,1,6,2024,525,6,,36,"PP","F","Z",,,,,,,21,14,"79A01C",,,,,,,,,,,
77718,1,6,2024,525,6,,41,"DO","M","Z",,,,,,,35,49,"7A0A82",,,,,,,,,,,
77719,1,6,2024,525,6,,12,"DM","M","Z",,,,,,,35,40,"BF0CDC",,,,,,,,,,,
77720,1,6,2024,525,6,,35,"DM","M","Z",,,,,,,31,39,"79C69E",,,,,,,,,,,
77721,1,6,2024,525,24,,42,"DM","F","Z",,,,,,,35,48,"799EE9","*",,,,,,,,,,
77722,1,6,2024,525,24,,62,"DM","F","Z",,,,,,,33,40,"7A054F",,,,,,,,,,,
77723,1,6,2024,525,24,,25,"DM","F","Z",,,,,,,33,36,"BF1937",,,,,,,,,,,
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77725,1,6,2024,525,24,,27,"PE","F","Z",,,,,,,20,20,"05BC9D",,,,,,,,,,,
77726,1,6,2024,525,24,,13,"DO","F","Z",,,,,,,35,46,"7972C4",,,,,,,,,,,
77727,1,6,2024,525,24,3,31,"DM","M","Z",,,,,,,33,40,"79A195",,,,,,,,,,,
77728,1,6,2024,525,24,,32,"DO","M","Z",,,,,,,35,46,"79CD1C",,,,,,,,,,,
77729,1,6,2024,525,24,,72,"DM","M","Z",,,,,,,35,43,"78ABCF",,,,,,,,,,,
77730,1,6,2024,525,24,,44,"DM","F","Z",,,,,,,35,41,"797285","*",,,,,,,,,,
77731,1,6,2024,525,24,3,26,"DM","M","Z",,,,,,,35,46,"7971DF","*",,,,,,,,,,
77732,1,6,2024,525,24,3,31,"DM","F","Z",,,,,,,35,40,"79C88E","*",,,,,,,,,,
77733,1,6,2024,525,24,,66,"OT","M","Z",,,,,,,16,21,"05C4BE",,,,,,,,,,,
77734,1,6,2024,525,11,,24,"DM","M","Z",,,,,,,36,44,"C0F020",,,,,,,,,,,
77735,1,6,2024,525,11,,11,"DO","M","Z",,,,,,,34,43,"C2DF9C",,,,,,,,,,,
77736,1,6,2024,525,11,,72,"DM","F",,,,,"P",,,35,44,"795D92",,,,,,,,,,,
77737,1,6,2024,525,11,,35,"DM","M","Z",,,,,,,35,42,"7972C2",,,,,,,,,,,
77738,1,6,2024,525,11,,33,"DM","F","Z",,,,,,,35,41,"B26E2A",,,,,,,,,,,
77739,1,6,2024,525,11,,53,"DM","M","Z",,,,,,,35,41,"C2BB20",,,,,,,,,,,
77740,1,6,2024,525,11,,22,"DM","M","Z",,,,,,,35,40,"797CBA","*",,,,,,,,,,
77741,1,6,2024,525,11,,73,"DM","M","Z",,,,,,,35,42,"79523F",,,,,,,,,,,
77742,1,6,2024,525,11,,74,"OT","F","Z",,,,,,,17,19,"79FBCB",,,,,,,,,,,
77743,1,6,2024,525,18,,46,"DM","F","Z",,,,,,,35,42,"798E88",,,,,,,,,,,
77744,1,6,2024,525,18,,76,"DM","F","Z",,,,,,,35,42,"799F8E",,,,,,,,,,,
77745,1,6,2024,525,18,,27,"DM","F","Z",,,,,,,33,41,"056384",,,,,,,,,,,
77746,1,6,2024,525,18,,63,"DM","F","Z",,,,,,,35,41,"798F59",,,,,,,,,,,
77747,1,6,2024,525,18,,11,"DM","F","Z",,,,,,,35,38,"79D50F","*",,,,,,,,,,
77748,1,6,2024,525,18,,64,"DM","F",,,,,"P",,,36,46,"05C4B8",,,,,,,,,,,
77749,1,6,2024,525,18,,42,"DM","M","Z",,,,,,,35,43,"797B54",,,,,,,,,,,
77750,1,6,2024,525,19,,26,"PB","M","Z",,,,,,,27,36,"796FD8",,,,,,,,,,,
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77769,1,6,2024,525,22,,55,"PB","F","Z",,,,,,,26,25,"C0F1B2",,,,,,,,,,,
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77812,1,7,2024,525,8,3,77,"PB","M","Z",,,,,,,26,32,"BF16B4",,,,,,,,,,,
77813,1,7,2024,525,8,,34,"PB","M","Z",,,,,,,25,27,"79D635",,,,,,,,,,,
77814,1,7,2024,525,7,,42,"DO","M","Z",,,,,,,37,55,"BFB144",,,,,,,,,,,
77815,1,7,2024,525,7,,44,"DM","F","Z",,,,,,,35,45,"C2DBFC",,,,,,,,,,,
77816,1,7,2024,525,7,,32,"DM","M","Z",,,,,,,35,38,"799F71","*",,,,,,,,,,
77817,1,7,2024,525,7,,45,"DM","M","Z",,,,,,,35,42,"79FB3E",,,,,,,,,,,
77818,1,7,2024,525,7,,77,"DM","M","Z",,,,,,,34,42,"799781","*",,,,,,,,,,
77819,1,7,2024,525,7,,56,"DO","M","Z",,,,,,,35,50,"799F52","*",,,,,,,,,,
77820,1,7,2024,525,7,,22,"DM","M","Z",,,,,,,35,51,"79D7DC","*",,,,,,,,,,
77821,1,7,2024,525,13,,45,"DO","F","Z",,,,,,,35,45,"7A059F",,,,,,,,,,,
77822,1,7,2024,525,13,,74,"DM","F","Z",,,,,,,35,42,"7971CE",,,,,,,,,,,
77823,1,7,2024,525,13,,47,"DM","F","Z",,,,,,,36,35,"C2DC27",,,,,,,,,,,
77824,1,7,2024,525,14,,47,"DM","M","Z",,,,,,,35,40,"79CCE1",,,,,,,,,,,
77825,1,7,2024,525,14,,54,"DM","F","Z",,,,,,,35,43,"793DC3","*",,,,,,,,,,
77826,1,7,2024,525,14,,55,"RM","M","Z",,,,,,,16,10,"793E6E","*",,,,,,,,,,
77827,1,7,2024,525,14,,72,"DM","M","Z",,,,,,,35,40,"793FE6",,,,,,,,,,,
77828,1,7,2024,525,14,,45,"PB","M","Z",,,,,,,26,31,"795E6A",,,,,,,,,,,
77829,1,7,2024,525,14,,34,"DM","F","Z",,,,,,,35,48,"79D5E6",,,,,,,,,,,
77830,1,7,2024,525,14,,75,"DM","M","Z",,,,,,,36,38,"7940C4",,,,,,,,,,,
77831,1,7,2024,525,14,,52,"OT","F","Z",,,,,,,18,26,"0566F1",,,,,,,,,,,
77832,1,7,2024,525,14,,73,"DM","M","Z",,,,,,,34,43,"05BC43","*",,,,,,,,,,
77833,1,7,2024,525,14,,17,"DM","F",,,,,"P",,,35,45,"BF0F3D",,,,,,,,,,,
77834,1,7,2024,525,13,,65,"DM","F",,,,,"P",,,35,40,"05C37F",,,,,,,,,,,
77835,1,7,2024,525,13,,56,"DM","M","Z",,,,,,,35,45,"793F8B",,,,,,,,,,,
77836,1,7,2024,525,15,,37,"PE","M","Z",,,,,,,19,20,"79A17C",,,,,,,,,,,
77837,1,7,2024,525,15,,42,"OT","M","Z",,,,,,,19,22,"78AAB5",,,,,,,,,,,
77838,1,7,2024,525,15,,24,"RM","F","Z",,,,,,,15,12,"793DA4","*",,,,,,,,,,
77839,1,7,2024,525,17,,56,"DM","F","Z",,,,,,,35,42,,,,,,,,,,"D",,
77840,1,7,2024,525,17,,53,"DM","M","Z",,,,,,,36,36,"05C383",,,,,,,,,,,
77841,1,7,2024,525,17,,26,"DM","F","Z",,,,,,,35,38,"05BC42","*",,,,,,,,,,
77842,1,7,2024,525,17,,77,"DM","M","Z",,,,,,,37,41,"79984E",,,,,,,,,,,
77843,1,7,2024,525,17,,37,"DM","F","Z",,,,,,,34,50,"05BC3E","*",,,,,,,,,,
77844,1,7,2024,525,17,,51,"OT","F","Z",,,,,,,19,19,"79FBCB",,,,,,,,,,,
77845,1,7,2024,525,17,,21,"DM","M","Z",,,,,,,35,42,"05BCA7","*",,,,,,,,,,
77846,1,7,2024,525,16,,67,"PE","M","Z",,,,,,,18,18,"BEF3E0",,,,,,,,,"R",,
77847,1,7,2024,525,16,,27,"RM","M","Z",,,,,,,15,10,,,,,,,,,,"R",,
77848,1,7,2024,525,16,,17,"PE","M",,"J",,,,,,17,14,,,,,,,,,,"R",,
77849,1,7,2024,525,15,,32,"DM","M",,,"M",,,,,35,43,,,,,,,,,,"R",,
77850,1,7,2024,525,3,,26,"DM","F","Z",,,,,,,32,43,,,,,,,,,,"R",,
77851,1,7,2024,525,9,4,,,,,,,,,,,,,,,,,,,,,,,,
77852,1,7,2024,525,10,4,,,,,,,,,,,,,,,,,,,,,,,,