new model

weecology · Dec 14, 2020 · a33161a · a33161a
1 parent 37061dc
commit a33161a
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Showing 10 changed files with 11,773 additions and 3 deletions.
diff --git a/App/Zooniverse/data/PredictedBirds.dbf b/App/Zooniverse/data/PredictedBirds.dbf
diff --git a/App/Zooniverse/data/PredictedBirds.shp b/App/Zooniverse/data/PredictedBirds.shp
diff --git a/App/Zooniverse/data/PredictedBirds.shx b/App/Zooniverse/data/PredictedBirds.shx
diff --git a/App/Zooniverse/data/nest_detections.dbf b/App/Zooniverse/data/nest_detections.dbf
diff --git a/App/Zooniverse/data/nest_detections.shp b/App/Zooniverse/data/nest_detections.shp
diff --git a/App/Zooniverse/data/nest_detections.shx b/App/Zooniverse/data/nest_detections.shx
diff --git a/App/Zooniverse/data/parsed_annotations.csv b/App/Zooniverse/data/parsed_annotations.csv
diff --git a/Zooniverse/SLURM/train.sbatch b/Zooniverse/SLURM/train.sbatch
@@ -6,7 +6,7 @@
 #SBATCH --nodes=1                 # Number of MPI ranks
 #SBATCH --cpus-per-task=1
 #SBATCH --mem=30GB
-#SBATCH --time=1:00:00       #Time limit hrs:min:sec
+#SBATCH --time=24:00:00       #Time limit hrs:min:sec
 #SBATCH --output=/home/b.weinstein/logs/everglades_%j.out   # Standard output and error log
 #SBATCH --error=/home/b.weinstein/logs/everglades_%j.err
 #SBATCH --partition=gpu

diff --git a/Zooniverse/nest_detection.py b/Zooniverse/nest_detection.py
@@ -220,7 +220,7 @@ def extract_nests(filename, rgb_pool, savedir, upload=False):
 
     if upload:
         random.shuffle(subjects)
-        subject_set.add(subjects[0:20])
+        subject_set.add(subjects)
 
 def find_files():
     paths = glob.glob("/orange/ewhite/everglades/utm_projected/*.tif")

diff --git a/Zooniverse/predict.py b/Zooniverse/predict.py
@@ -142,7 +142,7 @@ def summarize(paths):
 
 if __name__ == "__main__":
     client = start(gpus=10,mem_size="30GB")    
-    model_path = "/orange/ewhite/everglades/Zooniverse/predictions/20201110_161912.h5"
+    model_path = "/orange/ewhite/everglades/Zooniverse/predictions/20201210_024559.h5"
 
     paths = find_files()
     print("Found {} files".format(len(paths)))