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manually update upload manifest
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@bw4sz
bw4sz committed Mar 31, 2020
1 parent 834313d commit 880fe40
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Showing 4 changed files with 342 additions and 223 deletions.
2 changes: 1 addition & 1 deletion Zooniverse/cron.txt
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Expand Up @@ -11,4 +11,4 @@
HOME=/home/b.weinstein/
PATH=/opt/slurm/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/bin:/home/b.weinstein/bin
[email protected]
15 15 * * * sbatch ${HOME}/EvergladesWadingBird/Zooniverse/submit_job.sbatch >> ${HOME}/logs/cron.log 2>&1
12 15 * * * sbatch ${HOME}/EvergladesWadingBird/Zooniverse/submit_job.sbatch >> ${HOME}/logs/cron.log 2>&1
2 changes: 1 addition & 1 deletion Zooniverse/manifest.py
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Expand Up @@ -124,7 +124,7 @@ def main(path, everglades_watch, save_dir="/orange/ewhite/everglades/Zooniverse/
saved_file = main(path, everglades_watch)
#Confirm it exists and write to the csv file
assert os.path.exists(saved_file)
uploaded = uploaded.path.append(pd.Series({"path":saved_file}),ignore_index=True)
uploaded["path"] = uploaded.path.append(pd.Series({"path":saved_file}),ignore_index=True)
except Exception as e:
print("{} failed with exception {}".format(path, e))

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95 changes: 51 additions & 44 deletions Zooniverse/uploaded.csv
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@@ -1,44 +1,51 @@
,path
0,/orange/ewhite/everglades/WadingBirds2020/6th Bridge/02_11_2020/6thBridge_02112020-0-0.tif
1,/orange/ewhite/everglades/WadingBirds2020/6th Bridge/02_11_2020/6thBridge_02112020-0-1.tif
2,/orange/ewhite/everglades/WadingBirds2020/6th Bridge/02_11_2020/6thBridge_02112020-0-2.tif
3,/orange/ewhite/everglades/WadingBirds2020/6th Bridge/02_11_2020/6thBridge_02112020-0-3.tif
4,/orange/ewhite/everglades/WadingBirds2020/6th Bridge/02_21_2020/6thBridge_02212020-0-0.tif
5,/orange/ewhite/everglades/WadingBirds2020/6th Bridge/02_21_2020/6thBridge_02212020-0-1.tif
6,/orange/ewhite/everglades/WadingBirds2020/6th Bridge/02_21_2020/6thBridge_02212020-0-2.tif
7,/orange/ewhite/everglades/WadingBirds2020/6th Bridge/02_21_2020/6thBridge_02212020-0-3.tif
8,/orange/ewhite/everglades/WadingBirds2020/6th Bridge/03_11_2020/6thBridge_03112020-0-0.tif
9,/orange/ewhite/everglades/WadingBirds2020/6th Bridge/03_11_2020/6thBridge_03112020-0-1.tif
10,/orange/ewhite/everglades/WadingBirds2020/6th Bridge/03_11_2020/6thBridge_03112020-0-2.tif
11,/orange/ewhite/everglades/WadingBirds2020/6th Bridge/03_11_2020/6thBridge_03112020-0-3.tif
12,/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-0.tif
13,/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-1.tif
14,/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-2.tif
15,/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-3.tif
16,/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-4.tif
17,/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-5.tif
18,/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-6.tif
19,/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-7.tif
20,/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-8.tif
21,/orange/ewhite/everglades/WadingBirds2020/Jerrod/Jerrod_02182020.tif
22,/orange/ewhite/everglades/WadingBirds2020/Jerrod/Jerrod_02242020.tif
23,/orange/ewhite/everglades/WadingBirds2020/Jerrod/Jerrod_03032020.tif
24,/orange/ewhite/everglades/WadingBirds2020/Jetport/Jetport_03092020/Jetport_03092020-0-0.tif
25,/orange/ewhite/everglades/WadingBirds2020/Jetport/Jetport_03092020/Jetport_03092020-0-1.tif
26,/orange/ewhite/everglades/WadingBirds2020/Jetport/Jetport_03162020.tif
27,/orange/ewhite/everglades/WadingBirds2020/Joule/03_10_2020/Joule_03102020-0-0.tif
28,/orange/ewhite/everglades/WadingBirds2020/Joule/03_10_2020/Joule_03102020-0-1.tif
29,/orange/ewhite/everglades/WadingBirds2020/Joule/03_10_2020/Joule_03102020-0-2.tif
30,/orange/ewhite/everglades/WadingBirds2020/Joule/03_10_2020/Joule_03102020-0-3.tif
31,/orange/ewhite/everglades/WadingBirds2020/Joule/03_10_2020/Joule_03102020-0-4.tif
32,/orange/ewhite/everglades/WadingBirds2020/Joule/03_10_2020/Joule_03102020-0-5.tif
33,/orange/ewhite/everglades/WadingBirds2020/Joule/Joule_02242020.tif
34,/orange/ewhite/everglades/WadingBirds2020/Joule/Joule_03032020-0-0.tif
35,/orange/ewhite/everglades/WadingBirds2020/Joule/Joule_03032020-0-1.tif
36,/orange/ewhite/everglades/WadingBirds2020/StartMel/StartMel_02172020.tif
37,/orange/ewhite/everglades/WadingBirds2020/StartMel/StartMel_02252020.tif
38,/orange/ewhite/everglades/WadingBirds2020/StartMel/StartMel_03042020.tif
39,/orange/ewhite/everglades/WadingBirds2020/StartMel/StartMel_03122020.tif
40,/orange/ewhite/everglades/WadingBirds2020/Vacation/Vacation_02172020.tif
41,/orange/ewhite/everglades/WadingBirds2020/Vacation/Vacation_02252020.tif
42,/orange/ewhite/everglades/WadingBirds2020/Vacation/Vacation_03122020.tif
path
/orange/ewhite/everglades/WadingBirds2020/6th Bridge/02_11_2020/6thBridge_02112020-0-0.tif
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/orange/ewhite/everglades/WadingBirds2020/6th Bridge/02_11_2020/6thBridge_02112020-0-2.tif
/orange/ewhite/everglades/WadingBirds2020/6th Bridge/02_11_2020/6thBridge_02112020-0-3.tif
/orange/ewhite/everglades/WadingBirds2020/6th Bridge/02_21_2020/6thBridge_02212020-0-0.tif
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/orange/ewhite/everglades/WadingBirds2020/6th Bridge/02_21_2020/6thBridge_02212020-0-2.tif
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/orange/ewhite/everglades/WadingBirds2020/6th Bridge/03_11_2020/6thBridge_03112020-0-0.tif
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/orange/ewhite/everglades/WadingBirds2020/6th Bridge/03_11_2020/6thBridge_03112020-0-2.tif
/orange/ewhite/everglades/WadingBirds2020/6th Bridge/03_11_2020/6thBridge_03112020-0-3.tif
/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-0.tif
/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-1.tif
/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-2.tif
/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-3.tif
/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-4.tif
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/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-7.tif
/orange/ewhite/everglades/WadingBirds2020/AlleyNorth/AlleyNorth_02132020-0-8.tif
/orange/ewhite/everglades/WadingBirds2020/Jerrod/Jerrod_02182020.tif
/orange/ewhite/everglades/WadingBirds2020/Jerrod/Jerrod_02242020.tif
/orange/ewhite/everglades/WadingBirds2020/Jerrod/Jerrod_03032020.tif
/orange/ewhite/everglades/WadingBirds2020/Jetport/Jetport_03092020/Jetport_03092020-0-0.tif
/orange/ewhite/everglades/WadingBirds2020/Jetport/Jetport_03092020/Jetport_03092020-0-1.tif
/orange/ewhite/everglades/WadingBirds2020/Jetport/Jetport_03162020.tif
/orange/ewhite/everglades/WadingBirds2020/Joule/03_10_2020/Joule_03102020-0-0.tif
/orange/ewhite/everglades/WadingBirds2020/Joule/03_10_2020/Joule_03102020-0-1.tif
/orange/ewhite/everglades/WadingBirds2020/Joule/03_10_2020/Joule_03102020-0-2.tif
/orange/ewhite/everglades/WadingBirds2020/Joule/03_10_2020/Joule_03102020-0-3.tif
/orange/ewhite/everglades/WadingBirds2020/Joule/03_10_2020/Joule_03102020-0-4.tif
/orange/ewhite/everglades/WadingBirds2020/Joule/03_10_2020/Joule_03102020-0-5.tif
/orange/ewhite/everglades/WadingBirds2020/Joule/Joule_02242020.tif
/orange/ewhite/everglades/WadingBirds2020/Joule/Joule_03032020-0-0.tif
/orange/ewhite/everglades/WadingBirds2020/Joule/Joule_03032020-0-1.tif
/orange/ewhite/everglades/WadingBirds2020/StartMel/StartMel_02172020.tif
/orange/ewhite/everglades/WadingBirds2020/StartMel/StartMel_02252020.tif
/orange/ewhite/everglades/WadingBirds2020/StartMel/StartMel_03042020.tif
/orange/ewhite/everglades/WadingBirds2020/StartMel/StartMel_03122020.tif
/orange/ewhite/everglades/WadingBirds2020/Vacation/Vacation_02172020.tif
/orange/ewhite/everglades/WadingBirds2020/Vacation/Vacation_02252020.tif
/orange/ewhite/everglades/WadingBirds2020/Vacation/Vacation_03122020.tif
/orange/ewhite/everglades/Zooniverse/CypressCity_02042020
/orange/ewhite/everglades/Zooniverse/CypressCity_02282020
/orange/ewhite/everglades/Zooniverse/CypressCity_03062020
/orange/ewhite/everglades/Zooniverse/CypressCity_03112020
/orange/ewhite/everglades/Zooniverse/Jerrod_03192020
/orange/ewhite/everglades/Zooniverse/Joule_03192020
/orange/ewhite/everglades/Zooniverse/Vacation_03192020
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