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@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

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  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 70 34

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 130 30

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 44 8

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 33 13

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 10

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    JavaScript 7 7

Repositories

Showing 10 of 107 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 1 3 5 0 Updated Jan 25, 2025
  • bugSigSimple Public

    Simple exploratory analysis of curated microbe signatures

    waldronlab/bugSigSimple’s past year of commit activity
    R 3 13 4 (2 issues need help) 0 Updated Jan 24, 2025
  • MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    waldronlab/MultiAssayExperiment’s past year of commit activity
    R 70 34 2 2 Updated Jan 24, 2025
  • lefser Public

    R implementation of the LEfSe method

    waldronlab/lefser’s past year of commit activity
    R 53 5 8 1 Updated Jan 23, 2025
  • BugSigDBEnrich Public

    A ShinyApp to perform enrichemnt analysis with BugSigDB signatures.

    waldronlab/BugSigDBEnrich’s past year of commit activity
    HTML 0 0 4 0 Updated Jan 21, 2025
  • MicrobiomeBenchmarkDataAnalyses Public

    Analyses using the datasets provided by the MicrobiomeBenchmarkData package.

    waldronlab/MicrobiomeBenchmarkDataAnalyses’s past year of commit activity
    R 0 0 0 0 Updated Jan 17, 2025
  • bedbaser Public

    An R client for bedbase.org

    waldronlab/bedbaser’s past year of commit activity
    R 1 0 4 0 Updated Jan 15, 2025
  • cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    waldronlab/cBioPortalData’s past year of commit activity
    R 33 13 5 0 Updated Jan 14, 2025
  • cMDClick Public
    waldronlab/cMDClick’s past year of commit activity
    R 0 0 1 0 Updated Jan 14, 2025
  • subtypeHeterogeneity Public

    Tumor subclonality of expression-based cancer subtypes

    waldronlab/subtypeHeterogeneity’s past year of commit activity
    R 6 0 1 0 Updated Jan 7, 2025
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