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Installation
Garikoitz Lerma-Usabiaga edited this page Apr 1, 2020
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There are four ways to run (and hence install) RTP:
- Install a docker client in your machine
- Launch these commands:
docker pull garikoitz/freesurfer-recon-all-dev
docker pull garikoitz/rtppreproc
docker pull garikoitz/rtp-pipeline
(Mengxing please edit this)
Follow this instructions for converting Dockers to singularity.
- Requires a paid Flywheel account, usually provided by your institution.
- If not available in the drop-down analysis gear list, ask your administration to install it.
- Git clone this repository, prepare the input data and config files and run the RTP() function.
- Not recommended and not supported, as there are other dependencies that we control on the Docker containers (for example, python and mrTrix)