Code

Haplotype sampling improvements#4329

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jltsiren merged 9 commits intomastervgteam/vg:masterfrom haplotype-sampling-improvementsvgteam/vg:haplotype-sampling-improvementsCopy head branch name to clipboardJul 4, 2024

+599-465

Commits

Commits on May 5, 2024

• Simplify WFAExtender

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  db62217

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Commits on May 10, 2024

• Ignore points that have fallen too far behind in WFAExtender

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  eb26e32

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Commits on Jun 11, 2024

• Non-greedy subchain boundaries

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  64fe857

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Commits on Jul 1, 2024

• Move Haplotypes to Recombinator

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  9e2ef48

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Commits on Jul 2, 2024

• Haploid scoring option for haplotype sampling

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  0bd1c84

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• Make non-greedy subchain boundaries optional

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  65aaf71

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• More parameter validation in vg gbwt

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  a614f71

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Commits on Jul 3, 2024

• Add presets for haplotype sampling

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  a018e65

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Commits on Jul 4, 2024

• Merge branch 'master' of https://github.com/vgteam/vg

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  333f269

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