Skip to content

Commit

Permalink
add nesting test graphs!
Browse files Browse the repository at this point in the history
  • Loading branch information
glennhickey committed Jun 4, 2024
1 parent 5fc14cc commit f69d5b1
Show file tree
Hide file tree
Showing 4 changed files with 81 additions and 0 deletions.
17 changes: 17 additions & 0 deletions test/nesting/nested_snp_in_del.gfa
Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
H VN:Z:1.0
S 1 C
S 2 A
S 3 T
S 4 A
S 5 G
S 6 T
P x 1+,2+,3+,5+,6+ *
P a#1#y0 1+,2+,4+,5+,6+ *
P a#2#y1 1+,6+ *
L 1 + 2 + 0M
L 1 + 6 + 0M
L 2 + 3 + 0M
L 2 + 4 + 0M
L 3 + 5 + 0M
L 4 + 5 + 0M
L 5 + 6 + 0M
17 changes: 17 additions & 0 deletions test/nesting/nested_snp_in_ins.gfa
Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
H VN:Z:1.0
S 1 C
S 2 A
S 3 T
S 4 A
S 5 G
S 6 T
P a#2#y1 1+,2+,3+,5+,6+ *
P a#1#y0 1+,2+,4+,5+,6+ *
P x 1+,6+ *
L 1 + 2 + 0M
L 1 + 6 + 0M
L 2 + 3 + 0M
L 2 + 4 + 0M
L 3 + 5 + 0M
L 4 + 5 + 0M
L 5 + 6 + 0M
19 changes: 19 additions & 0 deletions test/nesting/nested_snp_in_ins2.gfa
Original file line number Diff line number Diff line change
@@ -0,0 +1,19 @@
H VN:Z:1.0
S 1 C
S 2 A
S 3 T
S 4 A
S 5 G
S 6 T
P a#2#y1 1+,2+,3+,5+,6+ *
P a#1#y0 1+,2+,4+,5+,6+ *
P x 1+,6+ *
P b#1#y0 1+,2+,4+,5+,6+ *
P b#2#y2 1+,6+ *
L 1 + 2 + 0M
L 1 + 6 + 0M
L 2 + 3 + 0M
L 2 + 4 + 0M
L 3 + 5 + 0M
L 4 + 5 + 0M
L 5 + 6 + 0M
28 changes: 28 additions & 0 deletions test/nesting/nested_snp_in_nested_ins.gfa
Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
H VN:Z:1.0
S 1 C
S 2 A
S 3 T
S 31 T
S 32 G
S 33 C
S 34 C
S 35 T
S 4 A
S 5 G
S 6 T
P a#2#y1 1+,2+,3+,31+,32+,34+,35+,5+,6+ *
P a#1#y0 1+,2+,3+,31+,33+,34+,35+,5+,6+ *
P x 1+,6+ *
L 1 + 2 + 0M
L 1 + 6 + 0M
L 2 + 3 + 0M
L 2 + 4 + 0M
L 3 + 31 + 0M
L 31 + 32 + 0M
L 31 + 33 + 0M
L 32 + 34 + 0M
L 33 + 34 + 0M
L 34 + 35 + 0M
L 35 + 5 + 0M
L 4 + 5 + 0M
L 5 + 6 + 0M

1 comment on commit f69d5b1

@adamnovak
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

vg CI tests complete for branch deconstruct. View the full report here.

16 tests passed, 0 tests failed and 0 tests skipped in 17697 seconds

Please sign in to comment.