Use a toil-vg that uses an R new enough to install the current versio…

…ns of the packages the plotting scripts need
vgteam · Feb 7, 2024 · e09fcc7 · e09fcc7
1 parent 56bc933
commit e09fcc7
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Showing 7 changed files with 7 additions and 7 deletions.
diff --git a/deps/dozeu b/deps/dozeu
diff --git a/deps/gbwt b/deps/gbwt
diff --git a/deps/gcsa2 b/deps/gcsa2
diff --git a/deps/libhandlegraph b/deps/libhandlegraph
diff --git a/deps/libvgio b/deps/libvgio
diff --git a/deps/sublinear-Li-Stephens b/deps/sublinear-Li-Stephens
diff --git a/vgci/vgci.sh b/vgci/vgci.sh
@@ -30,7 +30,7 @@ KEEP_INTERMEDIATE_FILES=0
 # Should we show stdout and stderr from tests? If so, set to "-s".
 SHOW_OPT=""
 # What toil-vg should we install?
-TOIL_VG_PACKAGE="git+https://github.com/vgteam/toil-vg.git@64774cc76ef117aef705c1b5203450482c6a4b60"
+TOIL_VG_PACKAGE="git+https://github.com/vgteam/toil-vg.git@ed7fe342713a5687ecf705e596b27aa8de6e3fe9"
 # What toil should we install?
 # Could be something like "toil[aws,mesos]==3.20.0"
 # or "git+https://github.com/DataBiosphere/toil.git@3ab74776a3adebd6db75de16985ce9d734f60743#egg=toil[aws,mesos]"
+1 −1		LICENSE
+10 −16		src/build_gbwt.cpp
+6 −7		src/dynamic_gbwt.cpp
+2 −2		src/metadata.cpp
+3 −3		include/gcsa/files.h
+1 −1		include/gcsa/path_graph.h
+6 −13		include/gcsa/support.h
+1 −1		src/build_gcsa.cpp
+1 −2		src/convert_graph.cpp
+5 −11		src/files.cpp
+1 −1		src/gcsa.cpp
+6 −15		src/path_graph.cpp
+1 −16		src/support.cpp
+1 −1		src/dagify.cpp
+0 −2		src/include/handlegraph/serializable.hpp
+1 −1		src/strongly_connected_components.cpp
+0 −12		README.md
+1 −1		deps/libhandlegraph
+3 −3		include/vg/io/alignment_emitter.hpp
+6 −6		include/vg/io/alignment_io.hpp
+1 −1		include/vg/io/basic_stream.hpp
+1 −1		include/vg/io/edit.hpp
+2 −2		src/alignment_emitter.cpp
+1 −1		src/json2pb.cpp
+1 −1		test.cpp