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Merge pull request #4224 from vgteam/robustify-ci
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Fetch test reads over possibly-more-reliable HTTPS
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@adamnovak
adamnovak authored Feb 26, 2024
2 parents 18bf9cd + 69eb684 commit 18c7b60
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion vgci/vgci.py
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Expand Up @@ -1284,7 +1284,7 @@ def test_sim_chr21_snp1kg_trained(self):
sim_opts='-p 570 -v 150 -S 4 -i 0.002 -I',
# 800k 148bp reads from Genome in a Bottle NA12878 library
# (placeholder while finding something better)
sim_fastq='ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/131219_D00360_005_BH814YADXX/Project_RM8398/Sample_U5a/U5a_AGTCAA_L002_R1_007.fastq.gz')
sim_fastq='https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/NA12878/NIST_NA12878_HG001_HiSeq_300x/131219_D00360_005_BH814YADXX/Project_RM8398/Sample_U5a/U5a_AGTCAA_L002_R1_007.fastq.gz')

@skip("skipping test to keep runtime down")
@timeout_decorator.timeout(2400)
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vg CI tests complete for merge to master. View the full report here.

16 tests passed, 0 tests failed and 0 tests skipped in 17045 seconds

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