Measury is a measurement tool for microscope images. The goal ist to simplify and accelerate the measurements of structures from images.
The program can be started via python or via the executable which is provided in the releases. Install via
pip install measury
In Python one simply calls:
import measury
measury.run()
Supports all image formats supported by opencv.
Automatic Detection of Scaling bar. Just select the tool identify scaling and click on the scale bar. Microscope profiles can store locations of scale bar for certain types of microscopes for easier detection.
You can move the image by dragging the mouse wheel or by selecting move mode
There are several Tools available to measure your structures.
- Select (select objects without changing them)
- Line
- Rectangle
- Square (by pressing Ctrl)
- Ellipse
- Circle (by pressing Ctrl)
- Angle
First create a Python environment of your choice (conda, venv, ect.) and activate it.
python -m venv venv
Then install the measury package from source
pip install .
To run Measury simply by using the run.py file (which shows detailed logs)
python run.py
or via
import measury
measury.run()
To run tests you will need to install pytest as well
pip install pytest
Then, simply calling pytest will run the tests. For the graphical tests a display server has to be installed on the system.
pytest
#or
python -m pytest
To compile this project it is advised to use pyinstaller.
It is important to use Pyinstaller >= 6.0.0
This guides you through all steps that are needed for running it.
First, pyinstaller should be installed via pip or conda
pip install pyinstaller
# or with conda
conda install -c conda-forge pyinstaller
Finally, run the compiling script which calls pyinstaller
python compile.py
This will result in a folder dist where the compiled project will be placed.
The compile.py script has the option to create a compressed .zip file of the project. You can set
zipped = True
to achieve this behavior.