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Update README.md
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arunbodd authored Aug 4, 2022
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Expand Up @@ -12,7 +12,7 @@ The purpose of this app is to develop an interactive Shiny portal that can dehas
- [Example Data](#exampledata)
- [Usage](#usage)
- [Installation](#installation)
- [Dependecies](#requirements)
- [Requirements](#requirements)
- [Plan](#plan)
- [Module-1](#module-1)
- [Module-2](#module-2)
Expand All @@ -21,7 +21,7 @@ The purpose of this app is to develop an interactive Shiny portal that can dehas
- [Module-5](#module-5)
- [Module-6](#module-6)
- [Module-7](#module-7)
- [Module-8](#module-8)
- [Future Development](#futuredevelopment)
- [Results](#results)
- [Team Members](#team-members)

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*R Libraries required:*

Seurat
dplyr
plotly
ggplot2
clusterprofiler
knitr
kableExtra
cowplot
gridExtra
tidyverse
biomaRt
Matrix
stringr
DoubletFinder (optional)
SingleR (optional - Cell annotation Tool)
Seurat, dplyr, plotly, ggplot2, clusterprofiler, knitr, kableExtra, cowplot, gridExtra, tidyverse, biomaRt, Matrix, stringr, DoubletFinder (optional), SingleR (optional - Cell annotation Tool)

## Plan

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### Module-7

Multi-gene set comparison module – Comparison of genes in Hallmark vs KEGG pathways.

### Module-8

Visualization module – Additional plots like Marker genes expression across multiple treatment groups.

### FutureDevelopment

1. Comparison of Demultiplexing method - HTODemux, Demuxlet, scSplit.
2. Multi-gene set comparison module – Comparison of genes in Hallmark vs KEGG pathways.
3. Antibody assay analysis.
4. T-Cell and B-Cell repertoire Analysis.

## Results

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