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Allowed process substitution as input #128

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Allowed process substitution as input #128

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2 changes: 1 addition & 1 deletion bin/prokka
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Expand Up @@ -398,7 +398,7 @@ msg("Using genetic code table $gcode.");
# read in sequences; remove small contigs; replace ambig with N

my $in = shift @ARGV or err("Please supply a contig FASTA file on the command line.");
(-r $in and !-d _ and -s _) or err("'$in' is not a readable non-empty FASTA file");
(-r $in and !-d _ and (-s _ or -p _)) or err("'$in' is not a readable non-empty FASTA file");
msg("Loading and checking input file: $in");
my $fin = Bio::SeqIO->new(-file=>$in, -format=>'fasta');
my $fout = Bio::SeqIO->new(-file=>">$outdir/$prefix.fna", -format=>'fasta');
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