MueLu: Add ComputeNodesInAggregate for Aggregates_kokkos #10902

GrahamBenHarper · 2022-08-19T06:14:12Z

@trilinos/muelu

Motivation

This addresses an inconsistency between Aggregates and Aggregates_kokkos. As an added bonus, this enables matrix-free restriction grid transfers. With how non-parallel the algorithm is, I think I can see why nobody did this before 🙂

I have a couple bits of tidying to do before the final test, but I figured I'd open this now anyway. Mainly I'm really trying to figure out if the main couple loops can be turned into some more parallel-friendly algorithm. Otherwise I'll just copy everything to host and do the serial thing.

trilinos-autotester · 2022-08-19T12:05:18Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection Is Not Necessary for this Pull Request.

trilinos-autotester · 2022-08-19T12:07:14Z

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Using Repos:

Repo: TRILINOS (GrahamBenHarper/Trilinos)

Pull Request Author: GrahamBenHarper

trilinos-autotester · 2022-08-19T15:18:57Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

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CDash Test Results for PR# 10902.

Wiki: How to Reproduce PR Testing Builds and Errors.

jhux2

Lgtm

packages/muelu/src/Graph/Containers/MueLu_Aggregates_def.hpp

packages/muelu/src/Graph/Containers/MueLu_Aggregates_kokkos_def.hpp

lucbv

If we are not going to run things on device I would recommend only writing a wrapper that calls the non-kokkos version, that would require less maintenance and lead to less bugs down the road. But I think this is can be parallelized.

packages/muelu/src/Graph/Containers/MueLu_Aggregates_kokkos_def.hpp

GrahamBenHarper · 2022-08-19T18:20:37Z

@lucbv I've never used parallel_scan before. I'll check it out! I just pushed a first pass at attempting to do this on device properly, but I'll look into your feedback now. Thanks for looking at this!

GrahamBenHarper · 2022-08-19T18:43:51Z

There we go. I'm much happier now. I must have slept through the Kokkos tutorial parts where they covered parallel_scan, because this is the greatest thing ever 😅

trilinos-autotester · 2022-08-19T19:17:36Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2022-08-19T19:17:40Z

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TRILINOS_SOURCE_SHA	`d8f7c59`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`b1a864d`

Build Information

Test Name: Trilinos_PR_cuda-10.1.243

Build Num: 937
Status: STARTED

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Build Num: 457
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TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`b1a864d`

Using Repos:

Repo: TRILINOS (GrahamBenHarper/Trilinos)

Pull Request Author: GrahamBenHarper

trilinos-autotester · 2022-08-19T19:53:38Z

Status Flag 'Pull Request AutoTester' - Error: Jenkins Jobs - A user has commited a change to the PR before testing completed. The original testing SHA = d8f7c59 Does not match the current commit SHA = 55fcfac. The Jenkins Jobs will be shutdown; Testing of this PR must occur again.

trilinos-autotester · 2022-08-19T19:53:50Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Build Num: 921
Status: ERROR

Jenkins Parameters

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Build Information

Test Name: Trilinos_PR_gcc-7.2.0-serial

Build Num: 922
Status: ERROR

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Test Name: Trilinos_PR_gcc-7.2.0-debug

Build Num: 920
Status: ERROR

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Build Information

Test Name: Trilinos_PR_intel-17.0.1

Build Num: 921
Status: ERROR

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Build Information

Test Name: Trilinos_PR_clang-10.0.0

Build Num: 937
Status: ERROR

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TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
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Build Information

Test Name: Trilinos_PR_cuda-10.1.243

Build Num: 937
Status: ERROR

Jenkins Parameters

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Build Information

Test Name: Trilinos_PR_python3

Build Num: 748
Status: ERROR

Jenkins Parameters

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Build Information

Test Name: Trilinos_PR_cuda-11.4.2-uvm-off

Build Num: 457
Status: ERROR

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PR_LABELS	pkg: MueLu;AT: RETEST
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TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`b1a864d`

CDash Test Results for PR# 10902.

Wiki: How to Reproduce PR Testing Builds and Errors.

GrahamBenHarper · 2022-08-19T19:55:17Z

Okay this is for real the last pass. This should be pretty close to the best performance we can get on device.

trilinos-autotester · 2022-08-19T19:59:36Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2022-08-19T19:59:39Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection Is Not Necessary for this Pull Request.

trilinos-autotester · 2022-08-19T20:01:46Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Build Num: 922
Status: STARTED

Jenkins Parameters

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Build Num: 923
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Build Information

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Build Num: 922
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Build Information

Test Name: Trilinos_PR_clang-10.0.0

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Using Repos:

Repo: TRILINOS (GrahamBenHarper/Trilinos)

Pull Request Author: GrahamBenHarper

jhux2 · 2022-08-19T20:28:24Z

@GrahamBenHarper I noticed the dashboard failure is under Zoltan2Sphyx, but the error is clearly when building MueLu's unit tests. I saw this same thing in #10900. @bartlettroscoe Any idea why this might be?

GrahamBenHarper · 2022-08-19T21:11:22Z

I believe I've mentioned this before somewhere. Every time I see a Zoltan2Sphynx error I just click past it because there's always a different error in the log. The parallel build doesn't die until it reaches Zoltan2Sphynx, however, which is why I think the build reports the failure in that location erroneously.

GrahamBenHarper · 2022-08-19T21:16:11Z

Yep, you can definitely see this same false reporting on #10606. Here's the relevant cdash entry which incorrectly reports the Zoltan2Sphynx error. It was happening before that PR as well, but I assumed people were clicking past it to see the actual build log.

trilinos-autotester · 2022-08-19T23:15:46Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Build Num: 922
Status: FAILED

Jenkins Parameters

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TRILINOS_SOURCE_SHA	`5cb77ed`
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Build Num: 458
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CDash Test Results for PR# 10902.

Wiki: How to Reproduce PR Testing Builds and Errors.

trilinos-autotester · 2022-08-20T00:01:01Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2022-08-20T00:01:06Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection Is Not Necessary for this Pull Request.

trilinos-autotester · 2022-08-20T00:02:56Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Build Num: 923
Status: STARTED

Jenkins Parameters

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Using Repos:

Repo: TRILINOS (GrahamBenHarper/Trilinos)

Pull Request Author: GrahamBenHarper

bartlettroscoe · 2022-08-20T00:51:06Z

@GrahamBenHarper I noticed the dashboard failure is under Zoltan2Sphyx, but the error is clearly when building MueLu's unit tests. I saw this same thing in #10900. @bartlettroscoe Any idea why this might be?

See #10906 (comment)

trilinos-autotester · 2022-08-20T03:11:45Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: Trilinos_PR_gcc-8.3.0

Build Num: 923
Status: PASSED

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Parameter Name	Value
FORCE_CLEAN	true
GENCONFIG_BUILD_NAME	rhel7_sems-cuda-11.4.2-sems-gnu-10.1.0-sems-openmpi-4.0.5_release_static_Volta70_no-asan_complex_no-fpic_mpi_pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS	pkg: MueLu;AT: RETEST
PULLREQUESTNUM	10902
PULLREQUEST_CDASH_TRACK	Pull Request
TEST_REPO_ALIAS	TRILINOS
TRILINOS_NODE_LABEL	GPU
TRILINOS_SOURCE_BRANCH	muelu_aggregates_kokkos_computenodes
TRILINOS_SOURCE_REPO	https://github.com/GrahamBenHarper/Trilinos
TRILINOS_SOURCE_SHA	`498f790`
TRILINOS_SRN_CONFIG	true
TRILINOS_TARGET_BRANCH	develop
TRILINOS_TARGET_REPO	https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA	`b1a864d`

CDash Test Results for PR# 10902.

trilinos-autotester · 2022-08-20T03:12:03Z

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
THE LAST COMMIT TO THIS PULL REQUEST HAS NOT BEEN REVIEWED YET!

trilinos-autotester · 2022-08-20T03:12:10Z

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

trilinos-autotester · 2022-08-21T13:21:01Z

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

trilinos-autotester · 2022-08-22T13:40:56Z

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

cgcgcg · 2022-08-22T16:58:21Z

packages/muelu/src/Graph/Containers/MueLu_Aggregates_kokkos_def.hpp

+    LO INVALID = Teuchos::OrdinalTraits<LO>::invalid();
+
+    aggPtr = LO_view("aggPtr",numAggs+1);
+    aggNodes = LO_view("aggNodes",numNodes);


Is numNodes the number of all aggregated nodes, or the number of all nodes?

The number of all nodes. This is the same way it's handled in MueLu_Aggregates from what I recall, meaning there's probably a small amount of padding at the end in the case where there are unaggregated nodes.

trilinos-autotester · 2022-08-22T18:38:27Z

Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ csiefer2 ]!

trilinos-autotester · 2022-08-22T18:38:34Z

Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...

lucbv

Looks good now

GrahamBenHarper added the pkg: MueLu label Aug 19, 2022

GrahamBenHarper self-assigned this Aug 19, 2022

GrahamBenHarper requested a review from a team as a code owner August 19, 2022 06:14

jhux2 reviewed Aug 19, 2022

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GrahamBenHarper force-pushed the muelu_aggregates_kokkos_computenodes branch from 3c3e414 to d8f7c59 Compare August 19, 2022 18:42

GrahamBenHarper added the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Aug 19, 2022

GrahamBenHarper requested a review from lucbv August 19, 2022 18:43

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Aug 19, 2022

MueLu: Add Aggregates_kokkos.ComputeNodesInAggregate

5cb77ed

GrahamBenHarper force-pushed the muelu_aggregates_kokkos_computenodes branch from 55fcfac to 5cb77ed Compare August 19, 2022 19:54

GrahamBenHarper added the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Aug 19, 2022

jhux2 mentioned this pull request Aug 19, 2022

Framework: PR compile errors falsely showing up under Zoltan2Sphyx #10906

Closed

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Aug 19, 2022

MueLu: Fix signed vs unsigned comparison in Aggregates_kokkos.cpp

498f790

GrahamBenHarper added the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Aug 19, 2022

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Aug 20, 2022

csiefer2 approved these changes Aug 22, 2022

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cgcgcg reviewed Aug 22, 2022

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cgcgcg mentioned this pull request Aug 23, 2022

MueLu: Add matrix-free restriction and prolongation transfers #10916

Merged

lucbv approved these changes Aug 23, 2022

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GrahamBenHarper merged commit d92e59f into trilinos:develop Aug 23, 2022

GrahamBenHarper deleted the muelu_aggregates_kokkos_computenodes branch August 23, 2022 22:58

GrahamBenHarper mentioned this pull request Mar 10, 2023

MueLu: Merge *_kokkos factories and their classical counterparts #11658

Open

36 tasks

MueLu: Add ComputeNodesInAggregate for Aggregates_kokkos #10902

MueLu: Add ComputeNodesInAggregate for Aggregates_kokkos #10902

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GrahamBenHarper commented Aug 19, 2022

Motivation

trilinos-autotester commented Aug 19, 2022

trilinos-autotester commented Aug 19, 2022

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Test Name: Trilinos_PR_gcc-8.3.0

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Test Name: Trilinos_PR_gcc-7.2.0-serial

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Test Name: Trilinos_PR_gcc-7.2.0-debug

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Test Name: Trilinos_PR_intel-17.0.1

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Test Name: Trilinos_PR_clang-10.0.0

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Test Name: Trilinos_PR_cuda-10.1.243

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Test Name: Trilinos_PR_cuda-11.4.2-uvm-off

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trilinos-autotester commented Aug 19, 2022

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Test Name: Trilinos_PR_gcc-8.3.0

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Test Name: Trilinos_PR_gcc-7.2.0-serial

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Test Name: Trilinos_PR_gcc-7.2.0-debug

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Test Name: Trilinos_PR_intel-17.0.1

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Test Name: Trilinos_PR_clang-10.0.0

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Test Name: Trilinos_PR_cuda-10.1.243

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Test Name: Trilinos_PR_python3

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Test Name: Trilinos_PR_cuda-11.4.2-uvm-off

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GrahamBenHarper commented Aug 19, 2022

GrahamBenHarper commented Aug 19, 2022

trilinos-autotester commented Aug 19, 2022

trilinos-autotester commented Aug 19, 2022

trilinos-autotester commented Aug 19, 2022

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Test Name: Trilinos_PR_gcc-8.3.0

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Test Name: Trilinos_PR_gcc-7.2.0-serial

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Test Name: Trilinos_PR_gcc-7.2.0-debug

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Test Name: Trilinos_PR_intel-17.0.1

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Test Name: Trilinos_PR_clang-10.0.0