A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
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Updated
Sep 5, 2019 - Python
A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)
Codes I wrote for the paper : "Global determinants of freshwater and marine fish genetic diversity" Nature Communications, 2020
Script for sorting FASTA sequences by clade in a given tree topology.
semestral work at University of West Bohemia, Faculty of Applied Sciences, Department of Computer Science and Engineering
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