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πŸ” coverage extraction from BAM/CRAM files, supporting targets πŸ“Š  

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telatin/bamtocov

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bamtocov

Tools to extract coverage informations from BAM (and CRAM) files, based on the covtobed algorithm that supports stranded coverage and physical coverage, input from streams and uses a memory-efficient algorithm.

πŸ“– Documentation

Full documentation is available online at the dedicated website, or in this repository under docs.

Installation

The BamToCov package is available from BioConda

conda install -y -c bioconda bamtocov

References