Fix file formats

[andrewfullard]

📝 Description

Type: 🪲 bugfix

Resolves black formatting issues.

[tardis-bot]

*beep* *bop*
Hi human,
I ran ruff on the latest commit (01bba37).
Here are the outputs produced.
Results can also be downloaded as artifacts here.
Summarised output:

9	W293 	[*] Blank line contains whitespace
6	W291 	[*] Trailing whitespace
4	D202 	[*] No blank lines allowed after function docstring (found 1)
2	E701 	[ ] Multiple statements on one line (colon)
2	UP004	[*] Class `MacroAtomSolver` inherits from `object`
1	I001 	[*] Import block is un-sorted or un-formatted
1	E999 	[ ] SyntaxError: Expected an expression

Complete output(might be large):

.github/workflows/codestyle.yml:7:4: E999 SyntaxError: Expected an expression
.github/workflows/codestyle.yml:25:11: E701 Multiple statements on one line (colon)
.github/workflows/codestyle.yml:30:11: E701 Multiple statements on one line (colon)
.github/workflows/codestyle.yml:46:8: W291 [*] Trailing whitespace
.github/workflows/codestyle.yml:63:1: W293 [*] Blank line contains whitespace
.github/workflows/codestyle.yml:65:15: W291 [*] Trailing whitespace
.github/workflows/codestyle.yml:69:1: W293 [*] Blank line contains whitespace
.github/workflows/codestyle.yml:78:1: W293 [*] Blank line contains whitespace
.github/workflows/codestyle.yml:82:1: W293 [*] Blank line contains whitespace
.github/workflows/codestyle.yml:90:1: W293 [*] Blank line contains whitespace
.github/workflows/codestyle.yml:102:26: W291 [*] Trailing whitespace
.github/workflows/codestyle.yml:106:1: W293 [*] Blank line contains whitespace
.github/workflows/codestyle.yml:114:1: W293 [*] Blank line contains whitespace
.github/workflows/codestyle.yml:125:22: W291 [*] Trailing whitespace
.github/workflows/codestyle.yml:126:89: W291 [*] Trailing whitespace
.github/workflows/codestyle.yml:128:84: W291 [*] Trailing whitespace
.github/workflows/codestyle.yml:144:1: W293 [*] Blank line contains whitespace
.github/workflows/codestyle.yml:148:1: W293 [*] Blank line contains whitespace
tardis/opacities/macro_atom/macroatom_solver.py:8:23: UP004 [*] Class `MacroAtomSolver` inherits from `object`
tardis/opacities/macro_atom/macroatom_solver.py:14:9: D202 [*] No blank lines allowed after function docstring (found 1)
tardis/opacities/macro_atom/macroatom_solver.py:28:9: D202 [*] No blank lines allowed after function docstring (found 1)
tardis/opacities/macro_atom/macroatom_solver.py:90:9: D202 [*] No blank lines allowed after function docstring (found 1)
tardis/opacities/opacity_solver.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/opacities/opacity_solver.py:9:21: UP004 [*] Class `OpacitySolver` inherits from `object`
tardis/opacities/opacity_solver.py:17:9: D202 [*] No blank lines allowed after function docstring (found 1)
Found 25 errors.
[*] 22 fixable with the `--fix` option.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 69.37%. Comparing base (714cffc) to head (01bba37).
Report is 1 commits behind head on master.

Additional details and impacted files

@@            Coverage Diff             @@
##           master    #2801      +/-   ##
==========================================
- Coverage   69.91%   69.37%   -0.55%     
==========================================
  Files         206      206              
  Lines       15523    15523              
==========================================
- Hits        10853    10769      -84     
- Misses       4670     4754      +84     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

[tardis-bot]

*beep* *bop*
Hi human,
I ran benchmarks as you asked comparing master (714cffc) and the latest commit (01bba37).
Here are the logs produced by ASV.
Results can also be downloaded as artifacts here.

Significantly changed benchmarks:

All benchmarks:

Benchmarks that have stayed the same:

| Change   | Before [714cffc8] <master>   | After [01bba376]    | Ratio   | Benchmark (Parameter)                                                                                                               |
|----------|------------------------------|---------------------|---------|-------------------------------------------------------------------------------------------------------------------------------------|
|          | 7.51±2μs                     | 9.24±2μs            | ~1.23   | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket_volley                                    |
|          | 52.8±30μs                    | 47.4±30μs           | ~0.90   | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_line_scatter                                          |
|          | 47.3±20μs                    | 42.1±20μs           | ~0.89   | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_line_emission                                         |
|          | 2.26±2μs                     | 1.97±2μs            | ~0.87   | transport_montecarlo_estimators_radfield_estimator_calcs.BenchmarkMontecarloMontecarloNumbaPacket.time_update_line_estimators       |
|          | 1.84±0.2μs                   | 1.55±0.5μs          | ~0.84   | transport_geometry_calculate_distances.BenchmarkTransportGeometryCalculateDistances.time_calculate_distance_line                    |
|          | 63.3±0.08ms                  | 66.0±0.4ms          | 1.04    | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_rpacket_trackers_to_dataframe                  |
|          | 1.68±0.02ms                  | 1.74±0.03ms         | 1.03    | transport_montecarlo_main_loop.BenchmarkTransportMontecarloMontecarloMainLoop.time_montecarlo_main_loop                             |
|          | 31.2±0.02μs                  | 32.0±0μs            | 1.02    | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list                  |
|          | 3.89±0.6μs                   | 3.96±0.5μs          | 1.02    | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket_within_shell                              |
|          | 1.06±0m                      | 1.07±0m             | 1.01    | run_tardis.BenchmarkRunTardis.time_run_tardis_rpacket_tracking                                                                      |
|          | 2.78±0.6ms                   | 2.81±0.6ms          | 1.01    | transport_montecarlo_single_packet_loop.BenchmarkTransportMontecarloSinglePacketLoop.time_single_packet_loop                        |
|          | 551±100ns                    | 551±100ns           | 1.00    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_pair_creation_opacity_calculation                                |
|          | 612±100ns                    | 611±200ns           | 1.00    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_photoabsorption_opacity_calculation                              |
|          | 3.79±0.06ms                  | 3.81±0ms            | 1.00    | opacities_opacity_state.BenchmarkOpacitiesOpacityState.time_opacity_state_initialize('macroatom')                                   |
|          | 39.9±0.07s                   | 40.0±0.01s          | 1.00    | run_tardis.BenchmarkRunTardis.time_run_tardis                                                                                       |
|          | 2.07±0m                      | 2.08±0m             | 1.00    | spectrum_formal_integral.BenchmarkTransportMontecarloFormalIntegral.time_FormalIntegrator_functions                                 |
|          | 201±0.6ns                    | 201±0.02ns          | 1.00    | spectrum_formal_integral.BenchmarkTransportMontecarloFormalIntegral.time_intensity_black_body                                       |
|          | 3.31±0.3μs                   | 3.24±0.6μs          | 0.98    | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_bad_vpacket                                       |
|          | 744±1ns                      | 719±0.6ns           | 0.97    | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_thomson_scatter                                       |
|          | 22.9±5μs                     | 22.3±6μs            | 0.97    | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_last_interaction_tracker_list |
|          | 601±100ns                    | 571±100ns           | 0.95    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation                                      |
|          | 1.25±0μs                     | 1.18±0μs            | 0.94    | transport_geometry_calculate_distances.BenchmarkTransportGeometryCalculateDistances.time_calculate_distance_boundary                |
|          | 3.29±0.02ms                  | 3.03±0.02ms         | 0.92    | opacities_opacity_state.BenchmarkOpacitiesOpacityState.time_opacity_state_initialize('scatter')                                     |
|          | 6.80±0.5μs                   | 6.25±1μs            | 0.92    | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket                                           |

If you want to see the graph of the results, you can check it here