Update to use latest SBMLNetwork and libsbml.

With fixes to those libraries, things seem to...work?

.github/workflows/main.yml

@@ -82,7 +82,7 @@ jobs:
         libroadrunner_deps_owner: [ "sys-bio" ]
         libroadrunner_deps_repo: [ "libroadrunner-deps" ]
         libroadrunner_deps_name: [ "libroadrunner-deps" ]
-        libroadrunner_deps_release_version: [ "v2.2.10" ]
+        libroadrunner_deps_release_version: [ "v2.2.11" ]
         python_version: [ "3.12" ]
 
     runs-on: ${{ matrix.platform.os_name }}

src/module-sbml.cpp

@@ -1,13 +1,12 @@
 #include "module.h"
 #include "sbml/Model.h"
 #include <sbmlnetwork/libsbmlnetwork_sbmldocument.h>
-#include <sbmlnetwork/libsbmlnetwork_sbmldocument_helpers.h>
 #include <sbmlnetwork/libsbmlnetwork_sbmldocument_layout.h>
 #include <sbmlnetwork/libsbmlnetwork_sbmldocument_render.h>
 #include <sbmlnetwork/libsbmlnetwork_render_helpers.h>
 #include <sbmlnetwork/libsbmlnetwork_layout_helpers.h>
-#include "sbmlnetwork/colors/libsbmlnetwork_colors.h"
-#include "sbmlnetwork/styles/libsbmlnetwork_styles.h"
+#include "sbmlnetwork/features/colors/libsbmlnetwork_colors.h"
+#include "sbmlnetwork/features/styles/libsbmlnetwork_styles.h"
 #include "sbml/packages/layout/extension/LayoutModelPlugin.h"
 
 using namespace libsbml;
@@ -2455,7 +2454,7 @@ void Module::CreateSBMLModel(bool comp)
   if (m_autolayout.use) {
       LIBSBMLNETWORK_CPP_NAMESPACE::autorender(&m_sbml, m_autolayout.maxNumConnectedEdges);
       //For some reason, the following line is REQUIRED; otherwise I get linking errors(!) about how 'autolayout' is missing.  WTF?? LS DEBUG
-      LIBSBMLNETWORK_CPP_NAMESPACE::getSBMLObject(&m_sbml, "S1");
+      //LIBSBMLNETWORK_CPP_NAMESPACE::getSBMLObject(&m_sbml, "S1");
       if (m_layout.width != 0) {
           LIBSBMLNETWORK_CPP_NAMESPACE::setDimensionWidth(&m_sbml, m_layout.width);
       }

src/sbmlx.cpp

@@ -7,7 +7,7 @@
 #include "registry.h"
 #include "typex.h"
 #include <sbmlnetwork/libsbmlnetwork_render_helpers.h>
-#include <sbmlnetwork/colors/libsbmlnetwork_colors.h>
+#include <sbmlnetwork/features/colors/libsbmlnetwork_colors.h>
 
 using namespace std;
 using namespace libsbml;