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Retry OpenAlex SSL exceptions #48

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merged 1 commit into from
Jun 24, 2024
Merged

Retry OpenAlex SSL exceptions #48

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3 changes: 2 additions & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,8 @@ dependencies = [
"pandas",
"requests",
"python-dotenv",
"dimcli"
"dimcli",
"tenacity"
]

[tool.pytest.ini_options]
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4 changes: 2 additions & 2 deletions requirements.txt
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Expand Up @@ -102,14 +102,14 @@ sphinxcontrib-serializinghtml==1.1.10
# via sphinx
stack-data==0.6.3
# via ipython
tenacity==8.4.1
# via rialto-airflow (pyproject.toml)
tqdm==4.66.4
# via dimcli
traitlets==5.14.3
# via
# ipython
# matplotlib-inline
typing-extensions==4.12.2
# via ipython
tzdata==2024.1
# via pandas
urllib3==2.2.1
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11 changes: 10 additions & 1 deletion rialto_airflow/harvest/openalex.py
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Expand Up @@ -4,6 +4,8 @@
import time

import requests
from requests.exceptions import SSLError
from tenacity import retry, retry_if_exception_type, stop_after_delay, wait_random

from rialto_airflow.utils import invert_dict

Expand All @@ -27,6 +29,11 @@ def doi_orcids_pickle(authors_csv, pickle_file, limit=None):
pickle.dump(invert_dict(orcid_dois), handle, protocol=pickle.HIGHEST_PROTOCOL)


@retry(
wait=wait_random(1, 5),
stop=stop_after_delay(60),
retry=retry_if_exception_type(SSLError),
)
def dois_from_orcid(orcid: str):
"""
Pass in the ORCID ID and get back an iterator of DOIs for publications authored by that person.
Expand Down Expand Up @@ -79,5 +86,7 @@ def works_from_author_id(author_id, limit=None):
else:
yield result
else:
logging.error(f"encountered non-200 response: {url} {params}")
logging.error(
f"encountered HTTP {resp.status_code} response from {url} {params}: {resp.text}"
)
has_more = False
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