Code

feat: Release wheel for python 3.12#136

Code

Draft

dilawar wants to merge 41 commits intossandrews:masterssandrews/Smoldyn:masterfrom dilawar:python312dilawar/Smoldyn:python312Copy head branch name to clipboard

+73,377-2,009

Commits

Commits on Nov 11, 2023

• feat: Add support for python 3.12

  Show description for 00825d9
  dilawar

  committed
  00825d9

  Copy full SHA for 00825d9

• chore: minimal python version required is python 3.9

  dilawar

  committed
  fd4f0f2

  Copy full SHA for fd4f0f2

• doc: Minor tweak to comment in CMakeList.txt file

  dilawar

  committed
  a8d3af0

  Copy full SHA for a8d3af0

Commits on Jul 22, 2024

• improved command line input and diffusion coefficient changes at surfaces

  

  ssandrews

  authored and

  dilawar

  committed
  fc16647

  Copy full SHA for fc16647

• fixed bugs in last commit

  

  ssandrews

  authored and

  dilawar

  committed
  9e7fe22

  Copy full SHA for 9e7fe22

• Added surfacetransmit function to SurfaceParam.c

  

  ssandrews

  authored and

  dilawar

  committed
  39f6677

  Copy full SHA for 39f6677

• Support for transmission across surfaces with different diffusion coefficients

  

  ssandrews

  authored and

  dilawar

  committed
  5e6d8f5

  Copy full SHA for 5e6d8f5

• increased string lengths and fixed bug in bounce -2 type reactions

  

  ssandrews

  authored and

  dilawar

  committed
  3c41830

  Copy full SHA for 3c41830

• increased string lengths and fixed bug in bounce -2 type reactions

  

  ssandrews

  authored and

  dilawar

  committed
  ea09904

  Copy full SHA for ea09904

• minor documentation updates and warning removal

  

  ssandrews

  authored and

  dilawar

  committed
  b5dd89e

  Copy full SHA for b5dd89e

• build(deps): bump scipy from 1.8.0 to 1.10.0 in /source/pybind11/tests

  Show description for 0995646
  

  dependabot[bot]

  authored and

  dilawar

  committed
  0995646

  Copy full SHA for 0995646

• file name update

  

  ssandrews

  authored and

  dilawar

  committed
  d764e5d

  Copy full SHA for d764e5d

• work on excluded volume reactions

  

  ssandrews

  authored and

  dilawar

  committed
  0fcdebf

  Copy full SHA for 0fcdebf

• changes related to MacOS update to 14.1

  

  ssandrews

  authored and

  dilawar

  committed
  4474a84

  Copy full SHA for 4474a84

• added error information to file writing errors

  

  ssandrews

  authored and

  dilawar

  committed
  10bbb22

  Copy full SHA for 10bbb22

• chore: added files to gitignore for alex dev

  

  AlexPatrie

  authored and

  dilawar

  committed
  4801555

  Copy full SHA for 4801555

• feat: added biosimularium as dep and integrated in exec function

  

  AlexPatrie

  authored and

  dilawar

  committed
  7c90530

  Copy full SHA for 7c90530

• feat: added Min1.omex in examples

  

  AlexPatrie

  authored and

  dilawar

  committed
  3451b97

  Copy full SHA for 3451b97

• fix: updated biosimulators-simularium version in bindings setup

  

  AlexPatrie

  authored and

  dilawar

  committed
  6afe54b

  Copy full SHA for 6afe54b

• feat: updated biosimulators library with test

  

  AlexPatrie

  authored and

  dilawar

  committed
  09fda4f

  Copy full SHA for 09fda4f

• fix; updated cmakelists to look for python3.11

  

  AlexPatrie

  authored and

  dilawar

  committed
  d335821

  Copy full SHA for d335821

• updated workflow for linux

  

  AlexPatrie

  authored and

  dilawar

  committed
  10735d4

  Copy full SHA for 10735d4

• fix: added find package to find updated python version

  

  AlexPatrie

  authored and

  dilawar

  committed
  7a62b3b

  Copy full SHA for 7a62b3b

• fix: updated cmake lists for python version

  

  AlexPatrie

  authored and

  dilawar

  committed
  4845c09

  Copy full SHA for 4845c09

• fix: updated cmakelists and bindings setup

  

  AlexPatrie

  authored and

  dilawar

  committed
  eb3f119

  Copy full SHA for eb3f119

• fix: removed find packages

  

  AlexPatrie

  authored and

  dilawar

  committed
  35f81d8

  Copy full SHA for 35f81d8

• fix: updated biosimularium in setup file

  

  AlexPatrie

  authored and

  dilawar

  committed
  a64dd09

  Copy full SHA for a64dd09

• fix: updated cmakelists for python build

  

  AlexPatrie

  authored and

  dilawar

  committed
  c1ef13c

  Copy full SHA for c1ef13c

• fix: resolved namespace in import for flake8

  

  AlexPatrie

  authored and

  dilawar

  committed
  6a03d74

  Copy full SHA for 6a03d74

• fix: updated python version for pypi release

  

  AlexPatrie

  authored and

  dilawar

  committed
  13d38f0

  Copy full SHA for 13d38f0

• updated workflow script to upgrade pip

  

  AlexPatrie

  authored and

  dilawar

  committed
  e7f3666

  Copy full SHA for e7f3666

• fix: updated biosimulators smoldyn dockerfile

  

  AlexPatrie

  authored and

  dilawar

  committed
  ede5a53

  Copy full SHA for ede5a53

• fix: re-implemented dockerfile contents and added future deps

  

  AlexPatrie

  authored and

  dilawar

  committed
  f656e04

  Copy full SHA for f656e04

• Added PYTHON_VERSION option to CMakeLists file

  

  ssandrews

  authored and

  dilawar

  committed
  6dc8fcd

  Copy full SHA for 6dc8fcd

• fixed bug in cmdsetreactionratemolcount

  

  ssandrews

  authored and

  dilawar

  committed
  5792f41

  Copy full SHA for 5792f41

• update biosimulators.json to new version

  

  AlexPatrie

  authored and

  dilawar

  committed
  c932ea6

  Copy full SHA for c932ea6

• revert image version in biosimulators.json

  

  AlexPatrie

  authored and

  dilawar

  committed
  ccafa00

  Copy full SHA for ccafa00

• Preparing for version 2.73

  dilawar

  committed
  11e0c14

  Copy full SHA for 11e0c14

• added newline to toolchain file

  

  ssandrews

  authored and

  dilawar

  committed
  ac07598

  Copy full SHA for ac07598

• improved Mac install permissions

  

  ssandrews

  authored and

  dilawar

  committed
  f2ecca3

  Copy full SHA for f2ecca3

• progress on filament simulation

  

  ssandrews

  authored and

  dilawar

  committed
  f01a77d

  Copy full SHA for f01a77d