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@scipion-em

scipion-em

Official repository for Scipion plugins

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  1. scipion-pyworkflow scipion-pyworkflow Public

    Underlying pyworkflow module for the Scipion framework

    Python 6 5

  2. scipion-em scipion-em Public

    Base Scipion plugin defining objects and protocols for EM

    Python 9 5

  3. scipion-app scipion-app Public

    Base Scipion application that is based on pyworkflow and all extension plugins

    Python 7 2

  4. scipion-installer scipion-installer Public

    Scipion app installer for version 3. Compatible with python2 and python3. It creates virtualenv or conda environments.

    Python 3 2

  5. docs docs Public

    Scipion documentation repository

    Python 1 7

  6. scipion-em-tomo scipion-em-tomo Public

    Base tomography Scipion plugin with data model definition

    Python 8 5

Repositories

Showing 10 of 111 repositories
  • scipion-em-gapstop Public

    Plugin to use Gapstop_TM in Scipion

    scipion-em/scipion-em-gapstop’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Feb 11, 2025
  • scipion-em-fidder Public
    scipion-em/scipion-em-fidder’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Feb 11, 2025
  • scipion-em-cryosparc2 Public

    Plugin to use cryoSPARC2 programs within the Scipion framework

    scipion-em/scipion-em-cryosparc2’s past year of commit activity
    Python 2 GPL-3.0 0 10 0 Updated Feb 11, 2025
  • scipion-em-tomo Public

    Base tomography Scipion plugin with data model definition

    scipion-em/scipion-em-tomo’s past year of commit activity
    Python 8 GPL-3.0 5 38 (1 issue needs help) 3 Updated Feb 11, 2025
  • scipion-em-aretomo Public

    Plugin to use AreTomo within the Scipion framework

    scipion-em/scipion-em-aretomo’s past year of commit activity
    Python 2 GPL-3.0 0 2 0 Updated Feb 11, 2025
  • scipion-em-imod Public

    Plugin to use some of the Tomography tools from IMOD in Scipion

    scipion-em/scipion-em-imod’s past year of commit activity
    Python 2 GPL-3.0 2 18 (1 issue needs help) 2 Updated Feb 10, 2025
  • scipion-em-deepict Public

    This plugin provides a wrapper around the DeePiCt software (https://github.com/ZauggGroup/DeePiCt)

    scipion-em/scipion-em-deepict’s past year of commit activity
    Python 0 GPL-3.0 0 1 1 Updated Feb 10, 2025
  • scipion-pyworkflow Public

    Underlying pyworkflow module for the Scipion framework

    scipion-em/scipion-pyworkflow’s past year of commit activity
    Python 6 GPL-3.0 5 37 (1 issue needs help) 1 Updated Feb 10, 2025
  • scipion-em-datamanager Public

    A Scipion plugin to make depositions or retrieve data to/from several data portals

    scipion-em/scipion-em-datamanager’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Feb 7, 2025
  • scipion-em-facilities Public

    Plugin for Cryo-EM facilities to be used within Scipion framework

    scipion-em/scipion-em-facilities’s past year of commit activity
    Python 0 GPL-3.0 1 6 3 Updated Feb 6, 2025
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