Merge pull request usegalaxy-eu#1095 from sanjaysrikakulam/patch_brak…

…er3_env Add Germark env back to braker3 version 3.0.6
sanjaysrikakulam · Feb 2, 2024 · 1b1d23d · 1b1d23d
2 parents 7b8e199 + 56b11c8
commit 1b1d23d
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/files/galaxy/tpv/tools.yml b/files/galaxy/tpv/tools.yml
@@ -1072,6 +1072,9 @@ tools:
         - if: helpers.tool_version_eq(tool, '3.0.6+galaxy2')
           execute: |
             entity.params['singularity_container_id_override']="docker://teambraker/braker3:v1.0.6"
+          env:
+            GENEMARK_PATH: "/usr/local/tools/_conda/envs/[email protected]/bin/genemark/bin/"
+            PROTHINT_PATH: "/usr/local/tools/_conda/envs/[email protected]/bin/genemark/bin/gmes/ProtHint/bin/"
         - if: helpers.tool_version_eq(tool, '3.0.7+galaxy2')
           execute: |
             entity.params['singularity_container_id_override']="docker://teambraker/braker3:v3.0.7.1"