build: bump the python-dependencies group across 2 directories with 6 updates

[dependabot]

Bumps the python-dependencies group with 6 updates in the / directory:

Package	From	To
pytest	8.3.3	8.3.4
nbmake	1.5.4	1.5.5
matplotlib	3.9.2	3.10.0
python-semantic-release	9.14.0	9.15.2
numpy	2.1.3	2.2.1
click	8.1.7	8.1.8

Bumps the python-dependencies group with 3 updates in the /tests directory: pytest, nbmake and matplotlib.

Updates pytest from 8.3.3 to 8.3.4

Release notes

Sourced from pytest's releases.

8.3.4

pytest 8.3.4 (2024-12-01)

Bug fixes

• #12592: Fixed KeyError{.interpreted-text role="class"} crash when using --import-mode=importlib in a directory layout where a directory contains a child directory with the same name.

• #12818: Assertion rewriting now preserves the source ranges of the original instructions, making it play well with tools that deal with the AST, like executing.

• #12849: ANSI escape codes for colored output now handled correctly in pytest.fail{.interpreted-text role="func"} with [pytrace=False]{.title-ref}.

• #9353: pytest.approx{.interpreted-text role="func"} now uses strict equality when given booleans.

Improved documentation

• #10558: Fix ambiguous docstring of pytest.Config.getoption{.interpreted-text role="func"}.

• #10829: Improve documentation on the current handling of the --basetemp option and its lack of retention functionality (temporary directory location and retention{.interpreted-text role="ref"}).

• #12866: Improved cross-references concerning the recwarn{.interpreted-text role="fixture"} fixture.

• #12966: Clarify filterwarnings{.interpreted-text role="ref"} docs on filter precedence/order when using multiple @pytest.mark.filterwarnings <pytest.mark.filterwarnings ref>{.interpreted-text role="ref"} marks.

Contributor-facing changes

• #12497: Fixed two failing pdb-related tests on Python 3.13.

Commits

• 53f8b4e Update pypa/gh-action-pypi-publish to v1.12.2
• 98dff36 Prepare release version 8.3.4
• 1b474e2 approx: use exact comparison for bool (#13013)
• b541721 docs: Fix wrong statement about sys.modules with importlib import mode (#1298...
• 16cb87b pytest.fail: fix ANSI escape codes for colored output (#12959) (#12990)
• be6bc81 Issue #12966 Clarify filterwarnings docs on precedence when using multiple ma...
• 7aeb72b Improve docs on basetemp and retention (#12912) (#12928)
• c875841 Merge pull request #12917 from pytest-dev/patchback/backports/8.3.x/ded1f44e5...
• 6502816 Merge pull request #12913 from jakkdl/dontfailonbadpath
• 52135b0 Merge pull request #12885 from The-Compiler/pdb-py311 (#12887)
• Additional commits viewable in compare view

Updates nbmake from 1.5.4 to 1.5.5

Release notes

Sourced from nbmake's releases.

v1.5.5

• switch from poetry to uv
• switch from isort/black to ruff
• remove code using yaml from tests
• pin ci runner versions
• test on python 3.12, no longer 3.8 which is EOL
• update pyright, devcontainer cli
• fix junit test naming

Commits

• 18c5452 publish fix
• 2093ec6 uv publish (#132)
• a9cee00 updates (#131)
• a3730bc Published new version
• See full diff in compare view

Updates matplotlib from 3.9.2 to 3.10.0

Release notes

Sourced from matplotlib's releases.

REL: v3.10.0

Highlights of this release include:

- Preliminary support for free-threaded CPython 3.13
- New more-accessible color cycle
- Dark-mode diverging colormaps
- Exception handling control
- InsetIndicator artist
- FillBetweenPolyCollection
- Fill between 3D lines
- Data in 3D plots can now be dynamically clipped to the axes view limits
- Rotating 3d plots with the mouse
- Increased Figure limits with Agg renderer
- Subfigures no longer provisional
- Subfigures are now added in row-major order

Matplotlib v3.10.0rc1

This is the first release candidate for Matplotlib 3.10.0

REL: 3.9.4

This is the fourth bugfix release of the 3.9.x series.

This release contains two bug-fixes:

• Fix toolbar icons in GTK backend
• Fix Poly3DCollection initialization with list of lists

REL: 3.9.3

This is the third bugfix release of the 3.9.x series.

This release contains several bug-fixes and adjustments:

• Fix axline with extremely small slopes
• Fix axline with non-linear axis scales
• Fix minimumSizeHint with Qt backend
• Fix config directory usage when it's behind a symlink
• Fix draggable legend when blitting is enabled
• Fix high CPU utilization in the macosx backend
• Fix multiple hatch edgecolors passed to contourf
• Improve compatibility with pytest 8.2.0

Commits

• 8d64f03 REL: v3.10.0 release
• d9dfee8 [doc] Fix dead links
• 87a603f Update release notes for 3.10.0
• cdecf97 Update github stats for 3.10
• b8d19bd Merge pull request #29306 from meeseeksmachine/auto-backport-of-pr-29242-on-v...
• a42d0ed Backport PR #29242: DOC: Add kwdoc list to scatter() docstring
• 1900640 Merge pull request #29299 from QuLogic/merge-v39x
• 815389c Merge branch 'v3.9.x' into v3.10.x
• 73873c0 DOC: Create release notes for 3.9.4
• 9d17a2b DOC: Add Zenodo DOI for 3.9.4
• Additional commits viewable in compare view

Updates python-semantic-release from 9.14.0 to 9.15.2

Release notes

Sourced from python-semantic-release's releases.

v9.15.2 (2024-12-16)

Bug Fixes

• changelog: Ensures user rendered files are trimmed to end with a single newline (#1118, 6dfbbb0)

• cli: Add error message of how to gather full error output (#1116, ba85532)

• cmd-version: Enable maintenance prereleases (#864, b88108e)

• cmd-version: Fix handling of multiple prerelease token variants & git flow merges (#1120, 8784b9a)

• cmd-version: Fix version determination algorithm to capture commits across merged branches (#1120, 8784b9a)

• cmd-version: Forces tag timestamp to be same time as release commit (#1117, 7898b11)

• cmd-version: Handle multiple prerelease token variants properly (#1120, 8784b9a)

• config: Ensure default config loads on network mounted windows environments (#1124, a64cbc9)

• version: Remove some excessive log msgs from debug to silly level (#1120, 8784b9a)

• version-bump: Increment based on current commit's history only (#864, b88108e)

Performance Improvements

• cmd-version: Refactor version determination algorithm for accuracy & speed (#1120, 8784b9a)

Resolved Issues

• #789: Fix: Version determination of 4 branch GitFlow repo
• #861: Releasing a prerelease patch of a maintenance version
• #1123: Default configuration fails with changelog error on windows with network mounted directory path

---

Detailed Changes: v9.15.1...v9.15.2

v9.15.1 (2024-12-03)

Bug Fixes

• changelog-md: Fix commit sort of breaking descriptions section (75b342e)

• parser-angular: Ensure issues are sorted by numeric value rather than text sorted (3858add)

• parser-emoji: Ensure issues are sorted by numeric value rather than text sorted (7b8d2d9)

---

... (truncated)

Changelog

Sourced from python-semantic-release's changelog.

v9.15.2 (2024-12-16)

Bug Fixes

• changelog: Ensures user rendered files are trimmed to end with a single newline (#1118, 6dfbbb0)

• cli: Add error message of how to gather full error output (#1116, ba85532)

• cmd-version: Enable maintenance prereleases (#864, b88108e)

• test(fixtures): improve changelog generator to filter by max version

• test(fixtures): add repo fixture of a trunk only repo w/ dual version support

• test(fixtures): add repo fixture of a trunk only repo w/ dual version support & prereleases

• test(cmd-version): add rebuild repo tests for new dual version support repos

• test(version-determination): adjust unit tests of increment_version logic

This clarifies repeated function calls and pytest parameter names included the unclear assert diff. Adds additional tests to check bad states for failures and refactored to match new function signature.

• fix(version-bump): increment based on current commit's history only

Refactor duplicate logging messages and flow to process out odd cases in a fail fast methodology. This removes the reliance on any last full release that is not within the history of the current branch.

Resolves: #861

• cmd-version: Fix handling of multiple prerelease token variants & git flow merges (#1120, 8784b9a)

• refactor: define a custom logging level of silly

• fix(version): remove some excessive log msgs from debug to silly level

• test(fixtures): refactor builder functions for version file updates

• test(fixtures): adjust build command to handle versions w/ build metadata

... (truncated)

Commits

• 7b3f716 9.15.2
• a64cbc9 fix(config): ensure default config loads on network mounted windows environme...
• 1346637 ci(deps): bump psr/publish-action & tj-actions/changed-files action versi...
• b88108e fix(cmd-version): enable maintenance prereleases (#864)
• ea10354 ci(pr-wkflow): add pipeline concurrency limit for branch updates of PRs
• a72591c test(cmd-version): limit rebuild repos to only angular in non-comprehensive t...
• 8784b9a fix(cmd-version): fix handling of multiple prerelease token variants & git fl...
• 6dfbbb0 fix(changelog): ensures user rendered files are trimmed to end with a single ...
• 7898b11 fix(cmd-version): forces tag timestamp to be same time as release commit (#1117)
• ba85532 fix(cli): add error message of how to gather full error output (#1116)
• Additional commits viewable in compare view

Updates numpy from 2.1.3 to 2.2.1

Release notes

Sourced from numpy's releases.

2.2.1 (DEC 21, 2024)

NumPy 2.2.1 Release Notes

NumPy 2.2.1 is a patch release following 2.2.0. It fixes bugs found after the 2.2.0 release and has several maintenance pins to work around upstream changes.

There was some breakage in downstream projects following the 2.2.0 release due to updates to NumPy typing. Because of problems due to MyPy defects, we recommend using basedpyright for type checking, it can be installed from PyPI. The Pylance extension for Visual Studio Code is also based on Pyright. Problems that persist when using basedpyright should be reported as issues on the NumPy github site.

This release supports Python 3.10-3.13.

Contributors

A total of 9 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

• Charles Harris
• Joren Hammudoglu
• Matti Picus
• Nathan Goldbaum
• Peter Hawkins
• Simon Altrogge
• Thomas A Caswell
• Warren Weckesser
• Yang Wang +

Pull requests merged

A total of 12 pull requests were merged for this release.

• #27935: MAINT: Prepare 2.2.x for further development
• #27950: TEST: cleanups
• #27958: BUG: fix use-after-free error in npy_hashtable.cpp (#27955)
• #27959: BLD: add missing include
• #27982: BUG:fix compile error libatomic link test to meson.build
• #27990: TYP: Fix falsely rejected value types in ndarray.__setitem__
• #27991: MAINT: Don't wrap #include <Python.h> with extern "C"
• #27993: BUG: Fix segfault in stringdtype lexsort
• #28006: MAINT: random: Tweak module code in mtrand.pyx to fix a Cython...
• #28007: BUG: Cython API was missing NPY_UINTP.
• #28021: CI: pin scipy-doctest to 1.5.1
• #28044: TYP: allow None in operand sequence of nditer

Checksums

... (truncated)

Commits

• 7469245 Merge pull request #28047 from charris/prepare-2.2.1
• acb051e REL: Prepare for the NumPy 2.2.1 release [wheel build]
• 28a091a Merge pull request #28044 from charris/backport-28039
• 723605b TST: Add test for allowing None in operand sequence passed to nditer
• 554739e TYP: allow None in operand sequence of nditer
• 31bc4c8 Merge pull request #28021 from charris/backport-28020
• 32f52a3 CI: pin scipy-doctest to 1.5.1 (#28020)
• 6219aeb Merge pull request #28007 from charris/backport-28005
• eb7071c Merge pull request #28006 from charris/backport-28003
• 4f82c32 BUG: Cython API was missing NPY_UINTP.
• Additional commits viewable in compare view

Updates click from 8.1.7 to 8.1.8

Release notes

Sourced from click's releases.

8.1.8

This is the Click 8.1.8 fix release, which fixes bugs but does not otherwise change behavior and should not result in breaking changes compared to the latest feature release.

PyPI: https://pypi.org/project/click/8.1.8/ Changes: https://click.palletsprojects.com/en/stable/changes/#version-8-1-8 Milestone https://github.com/pallets/click/milestones/23?closed=1

• Fix an issue with type hints for click.open_file(). #2717
• Fix issue where error message for invalid click.Path displays on multiple lines. #2697
• Fixed issue that prevented a default value of "" from being displayed in the help for an option. #2500
• The test runner handles stripping color consistently on Windows. #2705
• Show correct value for flag default when using default_map. #2632
• Fix click.echo(color=...) passing color to coloroma so it can be forced on Windows. #2606.
• More robust bash version check, fixing problem on Windows with git-bash. #2638
• Cache the help option generated by the help_option_names setting to respect its eagerness. #2811
• Replace uses of os.system with subprocess.Popen. #1476
• Exceptions generated during a command will use the context's color setting when being displayed. #2193
• Error message when defining option with invalid name is more descriptive. #2452
• Refactor code generating default --help option to deduplicate code. #2563
• Test CLIRunner resets patched _compat.should_strip_ansi. #2732

Changelog

Sourced from click's changelog.

Version 8.1.8

Unreleased

• Fix an issue with type hints for click.open_file(). :issue:2717
• Fix issue where error message for invalid click.Path displays on multiple lines. :issue:2697
• Fixed issue that prevented a default value of "" from being displayed in the help for an option. :issue:2500
• The test runner handles stripping color consistently on Windows. :issue:2705
• Show correct value for flag default when using default_map. :issue:2632
• Fix click.echo(color=...) passing color to coloroma so it can be forced on Windows. :issue:2606.

Commits

• 934813e release version 8.1.8
• c23223b Add links to third-party projects enhancing Click (#2815)
• 822d4fd Add links to third-party projects
• 8e7bed0 Break up arguments section (#2586)
• 3241541 Remove some typing hints.
• bed0377 remove test pypi
• 6534590 update dev dependencies
• b1e392e fix typos
• fdc6b02 Fix missing reset in isolation function (#2733)
• ffd43e9 Fixed missing reset on _compat.should_strip_ansi.
• Additional commits viewable in compare view

Updates pytest from 8.3.3 to 8.3.4

Release notes

Sourced from pytest's releases.

8.3.4

pytest 8.3.4 (2024-12-01)

Bug fixes

• #12592: Fixed KeyError{.interpreted-text role="class"} crash when using --import-mode=importlib in a directory layout where a directory contains a child directory with the same name.

• #12818: Assertion rewriting now preserves the source ranges of the original instructions, making it play well with tools that deal with the AST, like executing.

• #12849: ANSI escape codes for colored output now handled correctly in pytest.fail{.interpreted-text role="func"} with [pytrace=False]{.title-ref}.

• #9353: pytest.approx{.interpreted-text role="func"} now uses strict equality when given booleans.

Improved documentation

• #10558: Fix ambiguous docstring of pytest.Config.getoption{.interpreted-text role="func"}.

• #10829: Improve documentation on the current handling of the --basetemp option and its lack of retention functionality (temporary directory location and retention{.interpreted-text role="ref"}).

• #12866: Improved cross-references concerning the recwarn{.interpreted-text role="fixture"} fixture.

• #12966: Clarify filterwarnings{.interpreted-text role="ref"} docs on filter precedence/order when using multiple @pytest.mark.filterwarnings <pytest.mark.filterwarnings ref>{.interpreted-text role="ref"} marks.

Contributor-facing changes

• #12497: Fixed two failing pdb-related tests on Python 3.13.

Commits

• 53f8b4e Update pypa/gh-action-pypi-publish to v1.12.2
• 98dff36 Prepare release version 8.3.4
• 1b474e2 approx: use exact comparison for bool (#13013)
• b541721 docs: Fix wrong statement about sys.modules with importlib import mode (#1298...
• 16cb87b pytest.fail: fix ANSI escape codes for colored output (#12959) (#12990)
• be6bc81 Issue #12966 Clarify filterwarnings docs on precedence when using multiple ma...
• 7aeb72b Improve docs on basetemp and retention (#12912) (#12928)
• c875841 Merge pull request #12917 from pytest-dev/patchback/backports/8.3.x/ded1f44e5...
• 6502816 Merge pull request #12913 from jakkdl/dontfailonbadpath
• 52135b0 Merge pull request #12885 from The-Compiler/pdb-py311 (#12887)
• Additional commits viewable in compare view

Updates nbmake from 1.5.4 to 1.5.5

Release notes

Sourced from nbmake's releases.

v1.5.5

• switch from poetry to uv
• switch from isort/black to ruff
• remove code using yaml from tests
• pin ci runner versions
• test on python 3.12, no longer 3.8 which is EOL
• update pyright, devcontainer cli
• fix junit test naming

Commits

• 18c5452 publish fix
• 2093ec6 uv publish (#132)
• a9cee00 updates (#131)
• a3730bc Published new version
• See full diff in compare view

Updates matplotlib from 3.9.2 to 3.10.0

Release notes

Sourced from matplotlib's releases.

REL: v3.10.0

Highlights of this release include:

- Preliminary support for free-threaded CPython 3.13
- New more-accessible color cycle
- Dark-mode diverging colormaps
- Exception handling control
- InsetIndicator artist
- FillBetweenPolyCollection
- Fill between 3D lines
- Data in 3D plots can now be dynamically clipped to the axes view limits
- Rotating 3d plots with the mouse
- Increased Figure limits with Agg renderer
- Subfigures no longer provisional
- Subfigures are now added in row-major order

Matplotlib v3.10.0rc1

This is the first release candidate for Matplotlib 3.10.0

REL: 3.9.4

This is the fourth bugfix release of the 3.9.x series.

This release contains two bug-fixes:

• Fix toolbar icons in GTK backend
• Fix Poly3DCollection initialization with list of lists

REL: 3.9.3

This is the third bugfix release of the 3.9.x series.

This release contains several bug-fixes and adjustments:

• Fix axline with extremely small slopes
• Fix axline with non-linear axis scales
• Fix minimumSizeHint with Qt backend
• Fix config directory usage when it's behind a symlink
• Fix draggable legend when blitting is enabled
• Fix high CPU utilization in the macosx backend
• Fix multiple hatch edgecolors passed to contourf
• Improve compatibility with pytest 8.2.0

Commits

• 8d64f03 REL: v3.10.0 release
• d9dfee8 [doc] Fix dead links
• 87a603f Update release notes for 3.10.0
• cdecf97 Update github stats for 3.10
• b8d19bd Merge pull request #29306 from meeseeksmachine/auto-backport-of-pr-29242-on-v...
• a42d0ed Backport PR #29242: DOC: Add kwdoc list to scatter() docstring
• 1900640 Merge pull request #29299 from QuLogic/merge-v39x
• 815389c Merge branch 'v3.9.x' into v3.10.x
• 73873c0 DOC: Create release notes for 3.9.4
• 9d17a2b DOC: Add Zenodo DOI for 3.9.4
• Additional commits viewable in compare view

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