Reset variant types after updating alleles #1883
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Variant type calls produced by bcf_set_variant_types() may be stale after updating alleles via bcf_update_alleles() or bcf_update_alleles_str(), so set d.var_type to -1 to force a recalculation. Fixes an out of bounds access in bcftools consensus that occurred when it added a new allele to a record.
pd3
approved these changes
Jan 30, 2025
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Variant type calls produced by
bcf_set_variant_types()may be stale after updating alleles viabcf_update_alleles()orbcf_update_alleles_str(), so setd.var_typeto -1 to force a recalculation.Fixes an out of bounds access in bcftools consensus that occurred when it added a new allele to a record.