hmdb schema: correct field names

saezlab · Oct 2, 2024 · d627d30 · d627d30
1 parent 158a04e
commit d627d30
Showing 1 changed file with 5 additions and 3 deletions.
diff --git a/omnipath_metabo/schema/_main.py b/omnipath_metabo/schema/_main.py
@@ -1,3 +1,5 @@
+from sqlalchemy import insert
+
 from . import _structure
 from ._base import Base
 from ._connection import Connection
@@ -53,9 +55,9 @@ def load(self):
 
         for row in self.resource:
 
-            insert_statement = self.scheme.insert().values(
-                smiles=row[1],
-                accession=row[0],
+            insert_statement = insert(self.scheme).values(
+                structure=row[1],
+                name=row[0],
                 #inchi=row['inchi']
                 )