id_types provides resource labels

saezlab · Nov 14, 2024 · 9a50189 · 9a50189
1 parent e975962
commit 9a50189
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Showing 2 changed files with 10 additions and 4 deletions.
diff --git a/omnipath_metabo/data/resource-labels.yaml b/omnipath_metabo/data/resource-labels.yaml
@@ -2,10 +2,10 @@ HMDB:
   kegg_id: KEGG
   bigg_id: BIGG
   pbd_id: PBD
-  wikipedia: WikiPedia
-  chemspiter: ChemSpider
-  fbonto: FBOnto
-  chebi: ChEBI
+  wikipedia_id: WikiPedia
+  chemspider_id: ChemSpider
+  fbonto_id: FBOnto
+  chebi_id: ChEBI
   biocyc_id: BioCyc
   drugbank_id: DrugBank
   foodb_id: FoodDB

diff --git a/omnipath_metabo/schema/_structure.py b/omnipath_metabo/schema/_structure.py
@@ -184,3 +184,9 @@ def __iter__(self):
                 'structure': (row[0], row[3], row[6]),
                 'properties':(row[7], row[8], None, row[10])
                 }
+
+def _id_types():
+    if 'ID_TYPES' not in globals():
+        globals()['ID_TYPES'] = _data.load('resource-labels')
+
+    return globals()['ID_TYPES']