HMDB foreign resource names insert works

saezlab · Nov 14, 2024 · 55ba43f · 55ba43f
1 parent 9869749
commit 55ba43f
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/omnipath_metabo/data/resource-labels.yaml b/omnipath_metabo/data/resource-labels.yaml
@@ -1,7 +1,7 @@
 HMDB:
   kegg_id: KEGG
   bigg_id: BIGG
-  pbd_id: PBD
+  pdb_id: PBD
   wikipedia_id: WikiPedia
   chemspider_id: ChemSpider
   fbonto_id: FBOnto
@@ -11,5 +11,6 @@ HMDB:
   foodb_id: FoodDB
   metlin_id: Metlin
   pubchem_compound_id: PubChem
-  phenol_explorer_id: Phenol-Explorer
+  phenol_explorer_compound_id: Phenol-Explorer
   vmh_id: Virtual Metbolic Human
+  knapsack_id: Knapsack
diff --git a/omnipath_metabo/schema/_main.py b/omnipath_metabo/schema/_main.py
@@ -132,9 +132,9 @@ def load(self):
 
         insert_resource = (
             insert(_structure.Resource).
-            values(name = resource_labels).
+            values([{'name': l} for l in resource_labels]).
             returning(_structure.Resource.id))
-    
+
         insert_resource = insert_resource.on_conflict_do_update(
                 index_elements=['name'],
                 set_ = {