Pass on exception if there are read errors. Relates to #45

s-andrews · Feb 28, 2020 · 45c9977 · 45c9977
1 parent cb87121
commit 45c9977
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/uk/ac/babraham/FastQC/Sequence/FastQFile.java b/uk/ac/babraham/FastQC/Sequence/FastQFile.java
@@ -209,9 +209,9 @@ private void readNext() throws SequenceFormatException {
 
 
 		} 
+		// We could have other errors like zip format exceptions which we need to catch
 		catch (IOException ioe) {
-			nextSequence = null;
-			ioe.printStackTrace();
+			throw new SequenceFormatException(ioe.getLocalizedMessage());
 		}
 	}