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run package msbuild
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xieguigang committed Jul 15, 2024
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2 changes: 1 addition & 1 deletion man/.get_context.1
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.TH .GET_CONTEXT 1 2024-Jun "" "get current workflow environment context"
.TH .GET_CONTEXT 1 2024-Jul "" "get current workflow environment context"
.SH NAME
.get_context \- .get_context()
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/.internal_call.1
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.TH .INTERNAL_CALL 1 2024-Jun "" "Invoke an analysis application"
.TH .INTERNAL_CALL 1 2024-Jul "" "Invoke an analysis application"
.SH NAME
.internal_call \- .internal_call(app, context)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/.onLoad.1
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.TH .ONLOAD 1 2024-Jun "" ".onLoad"
.TH .ONLOAD 1 2024-Jul "" ".onLoad"
.SH NAME
.onLoad \- .onLoad()
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/__build_app.1
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.TH __BUILD_APP 1 2024-Jun "" "Build workflow app object"
.TH __BUILD_APP 1 2024-Jul "" "Build workflow app object"
.SH NAME
__build_app \- __build_app(f)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/__runImpl.1
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.TH __RUNIMPL 1 2024-Jun "" "An internal function for start the workflow"
.TH __RUNIMPL 1 2024-Jul "" "An internal function for start the workflow"
.SH NAME
__runImpl \- __runImpl(context,
<i>disables</i> = 'list'())
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2 changes: 1 addition & 1 deletion man/__workfile_uri_parser.1
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.TH __WORKFILE_URI_PARSER 1 2024-Jun "" "parse the workfile expression"
.TH __WORKFILE_URI_PARSER 1 2024-Jul "" "parse the workfile expression"
.SH NAME
__workfile_uri_parser \- __workfile_uri_parser(uri)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/__workfiles.1
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.TH __WORKFILES 1 2024-Jun "" "parse the workfile expression"
.TH __WORKFILES 1 2024-Jul "" "parse the workfile expression"
.SH NAME
__workfiles \- __workfiles(files.uri)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/app.1
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.TH APP 1 2024-Jun "" "Analysis app constructor"
.TH APP 1 2024-Jul "" "Analysis app constructor"
.SH NAME
app \- app(name, analysis,
<i>desc</i> = <span style='color: brown;'><strong>'no description'</strong></span>,
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2 changes: 1 addition & 1 deletion man/app_check.delegate.1
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.TH APP_CHECK.DELEGATE 1 2024-Jun "" "Check the function signature of the app function"
.TH APP_CHECK.DELEGATE 1 2024-Jul "" "Check the function signature of the app function"
.SH NAME
app_check.delegate \- app_check.delegate(analysis)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/app_check.signature.1
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.TH APP_CHECK.SIGNATURE 1 2024-Jun "" "check of the required app slot"
.TH APP_CHECK.SIGNATURE 1 2024-Jul "" "check of the required app slot"
.SH NAME
app_check.signature \- app_check.signature(app)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/check_dependency.1
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.TH CHECK_DEPENDENCY 1 2024-Jun "" "Check of the analysis app dependency"
.TH CHECK_DEPENDENCY 1 2024-Jul "" "Check of the analysis app dependency"
.SH NAME
check_dependency \- check_dependency(app,
<i>context</i> = '.get_context'())
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2 changes: 1 addition & 1 deletion man/check_dependency.context_env.1
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.TH CHECK_DEPENDENCY.CONTEXT_ENV 1 2024-Jun "" "Check of the required environment symbols"
.TH CHECK_DEPENDENCY.CONTEXT_ENV 1 2024-Jul "" "Check of the required environment symbols"
.SH NAME
check_dependency.context_env \- check_dependency.context_env(requires, context)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/check_dependency.localfiles.1
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.TH CHECK_DEPENDENCY.LOCALFILES 1 2024-Jun "" "Check for the upstream file dependency"
.TH CHECK_DEPENDENCY.LOCALFILES 1 2024-Jul "" "Check for the upstream file dependency"
.SH NAME
check_dependency.localfiles \- check_dependency.localfiles(requires, context)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/create_memory_context.1
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.TH CREATE_MEMORY_CONTEXT 1 2024-Jun "" "create an in-memory context object just used for run debug"
.TH CREATE_MEMORY_CONTEXT 1 2024-Jul "" "create an in-memory context object just used for run debug"
.SH NAME
create_memory_context \- create_memory_context(
<i>mounts</i> = <span style='color: blue !important;'>NULL</span>)
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2 changes: 1 addition & 1 deletion man/definePipeline.1
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.TH DEFINEPIPELINE 1 2024-Jun "" "Create a custom pipeline workflow execute sequence"
.TH DEFINEPIPELINE 1 2024-Jul "" "Create a custom pipeline workflow execute sequence"
.SH NAME
definePipeline \- definePipeline(seq)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/dependency.context_env_missing.1
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.TH DEPENDENCY.CONTEXT_ENV_MISSING 1 2024-Jun "" "Generate the error message for missing context symbols"
.TH DEPENDENCY.CONTEXT_ENV_MISSING 1 2024-Jul "" "Generate the error message for missing context symbols"
.SH NAME
dependency.context_env_missing \- dependency.context_env_missing(context)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/dependency.workfiles_missing.1
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.TH DEPENDENCY.WORKFILES_MISSING 1 2024-Jun "" "Generate the error message for the missing required work files"
.TH DEPENDENCY.WORKFILES_MISSING 1 2024-Jul "" "Generate the error message for the missing required work files"
.SH NAME
dependency.workfiles_missing \- dependency.workfiles_missing(file)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/dependency_analysis.1
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.TH DEPENDENCY_ANALYSIS 1 2024-Jun "" "dependency_analysis"
.TH DEPENDENCY_ANALYSIS 1 2024-Jul "" "dependency_analysis"
.SH NAME
dependency_analysis \- dependency_analysis(app)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/dependency_graph.1
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.TH DEPENDENCY_GRAPH 1 2024-Jun "" "try to extract the dependency graph from the application modules"
.TH DEPENDENCY_GRAPH 1 2024-Jul "" "try to extract the dependency graph from the application modules"
.SH NAME
dependency_graph \- dependency_graph(mounts)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/echo_warning.1
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.TH ECHO_WARNING 1 2024-Jun "" "print warning message on the screen and the log file"
.TH ECHO_WARNING 1 2024-Jul "" "print warning message on the screen and the log file"
.SH NAME
echo_warning \- echo_warning(msg,
<i>app</i> = <span style='color: blue !important;'>NULL</span>)
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2 changes: 1 addition & 1 deletion man/extract_workflow_vertex.1
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.TH EXTRACT_WORKFLOW_VERTEX 1 2024-Jun "" "extract_workflow_vertex"
.TH EXTRACT_WORKFLOW_VERTEX 1 2024-Jul "" "extract_workflow_vertex"
.SH NAME
extract_workflow_vertex \- extract_workflow_vertex(meta)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/filepath_safe.1
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.TH FILEPATH_SAFE 1 2024-Jun "" "Create the file path safely"
.TH FILEPATH_SAFE 1 2024-Jul "" "Create the file path safely"
.SH NAME
filepath_safe \- filepath_safe(dir, filename,
<i>maxchars</i> = <span style='color: green;'>48</span>)
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2 changes: 1 addition & 1 deletion man/finalize.1
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.TH FINALIZE 1 2024-Jun "" "Mark end of the analysis workflow"
.TH FINALIZE 1 2024-Jul "" "Mark end of the analysis workflow"
.SH NAME
finalize \- finalize()
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/get_appName.func_reference.1
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.TH GET_APPNAME.FUNC_REFERENCE 1 2024-Jun "" "get app name from the analysis function as reference"
.TH GET_APPNAME.FUNC_REFERENCE 1 2024-Jul "" "get app name from the analysis function as reference"
.SH NAME
get_appName.func_reference \- get_appName.func_reference(app)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/get_appName.obj.1
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.TH GET_APPNAME.OBJ 1 2024-Jun "" "Get app name from the generated analysis app module"
.TH GET_APPNAME.OBJ 1 2024-Jul "" "Get app name from the generated analysis app module"
.SH NAME
get_appName.obj \- get_appName.obj(app)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/get_app_name.1
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.TH GET_APP_NAME 1 2024-Jun "" "Helper function for get app name"
.TH GET_APP_NAME 1 2024-Jul "" "Helper function for get app name"
.SH NAME
get_app_name \- get_app_name(app)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/get_config.1
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.TH GET_CONFIG 1 2024-Jun "" "get user parameter value inside current workflow context environment"
.TH GET_CONFIG 1 2024-Jul "" "get user parameter value inside current workflow context environment"
.SH NAME
get_config \- get_config(name,
<i>default</i> = <span style='color: blue !important;'>NULL</span>)
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2 changes: 1 addition & 1 deletion man/get_functionName.1
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.TH GET_FUNCTIONNAME 1 2024-Jun "" "get function name"
.TH GET_FUNCTIONNAME 1 2024-Jul "" "get function name"
.SH NAME
get_functionName \- get_functionName(f)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/get_timestamp.1
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.TH GET_TIMESTAMP 1 2024-Jun "" "get a character vector of current timespan"
.TH GET_TIMESTAMP 1 2024-Jul "" "get a character vector of current timespan"
.SH NAME
get_timestamp \- get_timestamp()
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/has_cachefile.1
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.TH HAS_CACHEFILE 1 2024-Jun "" "check the cache file is exists or not"
.TH HAS_CACHEFILE 1 2024-Jul "" "check the cache file is exists or not"
.SH NAME
has_cachefile \- has_cachefile(filepath)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/hook.1
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.TH HOOK 1 2024-Jun "" "Add workflow app component into the registry"
.TH HOOK 1 2024-Jul "" "Add workflow app component into the registry"
.SH NAME
hook \- hook(app)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/init_context.1
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.TH INIT_CONTEXT 1 2024-Jun "" "This function should be call at first"
.TH INIT_CONTEXT 1 2024-Jul "" "This function should be call at first"
.SH NAME
init_context \- init_context(
<i>outputdir</i> = <span style='color: brown;'><strong>'./'</strong></span>)
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2 changes: 1 addition & 1 deletion man/pull_configs.1
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.TH PULL_CONFIGS 1 2024-Jun "" "pull all configuration value from workflow registry"
.TH PULL_CONFIGS 1 2024-Jul "" "pull all configuration value from workflow registry"
.SH NAME
pull_configs \- pull_configs()
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/run.1
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.TH RUN 1 2024-Jun "" "Call this function to start run workflow"
.TH RUN 1 2024-Jul "" "Call this function to start run workflow"
.SH NAME
run \- run(
<i>registry</i> = <span style='color: blue !important;'>NULL</span>,
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2 changes: 1 addition & 1 deletion man/set_config.1
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.TH SET_CONFIG 1 2024-Jun "" "Set user parameters to the workflow context"
.TH SET_CONFIG 1 2024-Jul "" "Set user parameters to the workflow context"
.SH NAME
set_config \- set_config(
<i>configs</i> = 'list'())
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2 changes: 1 addition & 1 deletion man/set_dependency.1
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.TH SET_DEPENDENCY 1 2024-Jun "" "function for create application dependency data"
.TH SET_DEPENDENCY 1 2024-Jul "" "function for create application dependency data"
.SH NAME
set_dependency \- set_dependency(
<i>context.env</i> = 'list'(),
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2 changes: 1 addition & 1 deletion man/set_disable.1
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.TH SET_DISABLE 1 2024-Jun "" "Set workflow application disable flag"
.TH SET_DISABLE 1 2024-Jul "" "Set workflow application disable flag"
.SH NAME
set_disable \- set_disable(app,
<i>flag</i> = <span style='color: blue !important;'>TRUE</span>)
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2 changes: 1 addition & 1 deletion man/summary.1
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.TH SUMMARY 1 2024-Jun "" "Inspect the workflow analysis modules"
.TH SUMMARY 1 2024-Jul "" "Inspect the workflow analysis modules"
.SH NAME
summary \- summary()
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/tabulate_workflow_summary.1
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.TH TABULATE_WORKFLOW_SUMMARY 1 2024-Jun "" "Extract the workflow analysis contents"
.TH TABULATE_WORKFLOW_SUMMARY 1 2024-Jul "" "Extract the workflow analysis contents"
.SH NAME
tabulate_workflow_summary \- tabulate_workflow_summary(pool)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/throw_err.1
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.TH THROW_ERR 1 2024-Jun "" "echo error message on the screen and then crash the workflow"
.TH THROW_ERR 1 2024-Jul "" "echo error message on the screen and then crash the workflow"
.SH NAME
throw_err \- throw_err(msg)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/use_cache.1
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.TH USE_CACHE 1 2024-Jun "" "Work with cache file"
.TH USE_CACHE 1 2024-Jul "" "Work with cache file"
.SH NAME
use_cache \- use_cache(filepath, create)
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/workdir_root.1
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.TH WORKDIR_ROOT 1 2024-Jun "" "Get workspace root directory"
.TH WORKDIR_ROOT 1 2024-Jul "" "Get workspace root directory"
.SH NAME
workdir_root \- workdir_root()
.SH SYNOPSIS
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2 changes: 1 addition & 1 deletion man/workfile.1
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.TH WORKFILE 1 2024-Jun "" "Construct of the file path inside an app workspace"
.TH WORKFILE 1 2024-Jul "" "Construct of the file path inside an app workspace"
.SH NAME
workfile \- workfile(app,
<i>relpath</i> = <span style='color: blue !important;'>NULL</span>)
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2 changes: 1 addition & 1 deletion man/workspace.1
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.TH WORKSPACE 1 2024-Jun "" "get app workspace location"
.TH WORKSPACE 1 2024-Jul "" "get app workspace location"
.SH NAME
workspace \- workspace(app)
.SH SYNOPSIS
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1 change: 1 addition & 0 deletions vignettes/index.html
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RoxygenNote: 7.1.1
</pre>
<br />
<a href="./keywords.html">View package by keywords.</a>
<h2>R Package Symbols</h2>
<ul>
<li><a href="./R/docs/definePipeline.html">definePipeline</a></li>
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2 changes: 2 additions & 0 deletions vignettes/keywords.html
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