Badread v0.2.0
I made this version to include new Nanopore error/qscore models. These are named nanopore2020
and are now the default. For consistency, I renamed the old models from nanopore
and pacbio
to nanopore2018
and pacbio2016
.
I also increased the default read accuracy by a bit from --identity 85,95,5
to --identity 87.5,97.5,5
. This is to account for the fact that long reads are more accurate today than they were a few years ago. I still wanted Badread's defaults to be worse than real reads, but not too much worse 😄