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vineetbansal committed Dec 3, 2024
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6 changes: 3 additions & 3 deletions notebooks/paste2_tutorial.html
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Expand Up @@ -745,7 +745,7 @@ <h1>Compute partial pairwise alignment using PASTE2<a class="headerlink" href="#
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
(INFO) (paste.py) (03-Dec-24 14:29:44) GPU is not available, resorting to torch CPU.
(INFO) (paste.py) (03-Dec-24 20:37:25) GPU is not available, resorting to torch CPU.
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Expand All @@ -761,7 +761,7 @@ <h1>Compute partial pairwise alignment using PASTE2<a class="headerlink" href="#
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
(INFO) (paste.py) (03-Dec-24 14:31:36) GPU is not available, resorting to torch CPU.
(INFO) (paste.py) (03-Dec-24 20:39:18) GPU is not available, resorting to torch CPU.
</pre></div></div>
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<div class="nbinput docutils container">
Expand All @@ -777,7 +777,7 @@ <h1>Compute partial pairwise alignment using PASTE2<a class="headerlink" href="#
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
(INFO) (paste.py) (03-Dec-24 14:33:22) GPU is not available, resorting to torch CPU.
(INFO) (paste.py) (03-Dec-24 20:41:05) GPU is not available, resorting to torch CPU.
</pre></div></div>
</div>
<p>Let’s check the shape of each alignment matrix. For aligning a slice with n1 spots and a slice with n2 spots, the alignment matrix should be of shape (n1 * n2)</p>
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134 changes: 67 additions & 67 deletions notebooks/paste2_tutorial.ipynb
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Expand All @@ -953,18 +953,18 @@
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