SNAME -> {SNAME}

qiita-spots · Jan 29, 2025 · 15947d8 · 15947d8
1 parent 24485c4
commit 15947d8
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/qp_spades/tests/test_spades.py b/qp_spades/tests/test_spades.py
@@ -260,8 +260,8 @@ def test_spades(self):
 --output-prefix="$SNAME" ${{FWD}} ${{REV}} --max-mismatch-density=0.1 \
 > $OUTDIR/${{SNAME}}.flash.log 2>&1 && spades.py --{type} -m 128 -t \
 {threads} -o $OUTDIR/$SNAME --merge $OUTDIR/${{SNAME}}.extendedFrags.fastq \
---gemcode1-1 $OUTDIR/${SNAME}.notCombined_1.fastq \
---gemcode1-2 $OUTDIR/${SNAME}.notCombined_2.fastq
+--gemcode1-1 $OUTDIR/${{SNAME}}.notCombined_1.fastq \
+--gemcode1-2 $OUTDIR/${{SNAME}}.notCombined_2.fastq
 date
 """