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A modular, containerized pipeline for ATAC-seq data processing

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PEP compatible

PEPATAC is a pipeline designed to process ATAC-seq data. For more information see: http://code.databio.org/PEPATAC/

Docs

Develop docs with:

mkdocs serve -f mkdocs.yml

Build and deploy with:

mkdocs build -f mkdocs.yml -d $CODEBASE/code.databio.org/caravel/

Contributing

Pull requests welcome. Active development should occur in a development or feature branch.

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A modular, containerized pipeline for ATAC-seq data processing

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  • Python 56.9%
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