doc(cli): reorder sections and unify heading

[abn]

This has been bugging me for a while now. This change attempts the following.

1. Commands and sub-commands are ordered ascending alphabetically.
2. All option sections use #### headings.

Summary by Sourcery

Documentation:

• Reordered commands and sub-commands alphabetically. Standardized option section headings to ####.

[sourcery-ai]

Reviewer's Guide by Sourcery

This PR reorders sections and unifies headings in the cli.md document to improve readability and consistency. Specifically, commands and sub-commands are now ordered alphabetically, and all option sections use #### headings.

Flow diagram showing the document structure changes

graph TD
    A[Original Document Structure] --> B[Reordered Document Structure]

    subgraph Before
    A1[Random Command Order] --> A2[Mixed Heading Levels]
    A2 --> A3[### Options]
    end

    subgraph After
    B1[Alphabetically Ordered Commands] --> B2[Consistent Heading Levels]
    B2 --> B3[#### Options]
    end

    style A1 fill:#ffcccc
    style A2 fill:#ffcccc
    style B1 fill:#ccffcc
    style B2 fill:#ccffcc
    style B3 fill:#ccffcc

Loading

File-Level Changes

Change	Details	Files
Reordered commands and sub-commands alphabetically.	Sections for commands like about, add, build, cache, check, config, env, export, help, init, install, list, lock, new, publish, remove, run, search, self, shell, show, source, sync, update, and version are reordered alphabetically. Sub-commands under cache, env, and self are also reordered alphabetically within their respective sections.	docs/cli.md
Unified headings for option sections.	All option sections now consistently use #### headings for improved visual structure and clarity. This replaces previous inconsistent heading levels, such as ## and other variations.	docs/cli.md

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[sourcery-ai]

Hey @abn - I've reviewed your changes and they look great!

Here's what I looked at during the review

• 🟢 General issues: all looks good
• 🟢 Security: all looks good
• 🟢 Testing: all looks good
• 🟢 Complexity: all looks good
• 🟢 Documentation: all looks good

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[github-actions]

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Review comments addressed.