TopoNetX tutorial (#30)

pszufe · Feb 10, 2025 · d5d6760 · d5d6760
1 parent 5ddc80f
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diff --git a/requirements/tutorials.txt b/requirements/tutorials.txt
@@ -6,4 +6,5 @@ xgi>=0.9.1
 requests
 jupyter>=1.0
 ipython<=8.12.0
-nx_hif
+nx_hif
+toponetx
diff --git a/tutorials/tnx.ipynb b/tutorials/tnx.ipynb
@@ -0,0 +1,146 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import nx_hif\n",
+    "import toponetx as tnx\n",
+    "\n",
+    "G_hif = nx_hif.read_hif(\"data/lesmis.hif.json\")\n",
+    "H = tnx.SimplicialComplex([\n",
+    "    [G_hif.nodes[n][\"node\"] for n in G_hif[e]]\n",
+    "    for e, b in G_hif.nodes(data=\"bipartite\")\n",
+    "    if b == 1])"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 2,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "[Simplex(('BS',)),\n",
+       " Simplex(('LP',)),\n",
+       " Simplex(('VI',)),\n",
+       " Simplex(('BO', 'JV')),\n",
+       " Simplex(('BT', 'GI')),\n",
+       " Simplex(('BT', 'MA')),\n",
+       " Simplex(('BU', 'GA')),\n",
+       " Simplex(('BU', 'JD')),\n",
+       " Simplex(('BZ', 'TH')),\n",
+       " Simplex(('CL', 'MY')),\n",
+       " Simplex(('CO', 'TG')),\n",
+       " Simplex(('CO', 'TM')),\n",
+       " Simplex(('CR', 'EP')),\n",
+       " Simplex(('CV', 'MY')),\n",
+       " Simplex(('EN', 'QU')),\n",
+       " Simplex(('EP', 'MA')),\n",
+       " Simplex(('EP', 'MM')),\n",
+       " Simplex(('FF', 'GR')),\n",
+       " Simplex(('FN', 'MT')),\n",
+       " Simplex(('GA', 'JA')),\n",
+       " Simplex(('GA', 'JV')),\n",
+       " Simplex(('GA', 'MO')),\n",
+       " Simplex(('GE', 'MY')),\n",
+       " Simplex(('GG', 'MY')),\n",
+       " Simplex(('GI', 'MN')),\n",
+       " Simplex(('GI', 'TG')),\n",
+       " Simplex(('GP', 'MA')),\n",
+       " Simplex(('GP', 'MP')),\n",
+       " Simplex(('GP', 'TH')),\n",
+       " Simplex(('IS', 'JV')),\n",
+       " Simplex(('JA', 'LL')),\n",
+       " Simplex(('JA', 'PO')),\n",
+       " Simplex(('JA', 'SS')),\n",
+       " Simplex(('JL', 'JV')),\n",
+       " Simplex(('JV', 'MO')),\n",
+       " Simplex(('JV', 'MR')),\n",
+       " Simplex(('JV', 'MT')),\n",
+       " Simplex(('JV', 'PG')),\n",
+       " Simplex(('JV', 'PO')),\n",
+       " Simplex(('JV', 'SC')),\n",
+       " Simplex(('JV', 'SS')),\n",
+       " Simplex(('JV', 'TS')),\n",
+       " Simplex(('MA', 'MM')),\n",
+       " Simplex(('MA', 'TG')),\n",
+       " Simplex(('MA', 'TH')),\n",
+       " Simplex(('MC', 'MY')),\n",
+       " Simplex(('MG', 'MP')),\n",
+       " Simplex(('MG', 'MV')),\n",
+       " Simplex(('MG', 'TG')),\n",
+       " Simplex(('MM', 'PL')),\n",
+       " Simplex(('MN', 'TM')),\n",
+       " Simplex(('MY', 'NP')),\n",
+       " Simplex(('MY', 'SN')),\n",
+       " Simplex(('BB', 'JA', 'TH')),\n",
+       " Simplex(('BM', 'FN', 'JA')),\n",
+       " Simplex(('CO', 'FT', 'MA')),\n",
+       " Simplex(('CO', 'JA', 'TS')),\n",
+       " Simplex(('CO', 'JV', 'LL')),\n",
+       " Simplex(('CO', 'JV', 'TH')),\n",
+       " Simplex(('EN', 'JA', 'JV')),\n",
+       " Simplex(('EN', 'JV', 'MA')),\n",
+       " Simplex(('FF', 'JA', 'JV')),\n",
+       " Simplex(('FF', 'JV', 'MI')),\n",
+       " Simplex(('FN', 'JA', 'JV')),\n",
+       " Simplex(('FN', 'SP', 'SS')),\n",
+       " Simplex(('FN', 'TH', 'TM')),\n",
+       " Simplex(('GA', 'XA', 'XB')),\n",
+       " Simplex(('JA', 'TH', 'TM')),\n",
+       " Simplex(('AZ', 'EP', 'TH', 'TM')),\n",
+       " Simplex(('BO', 'GT', 'HL', 'JO')),\n",
+       " Simplex(('CM', 'CR', 'EN', 'GT')),\n",
+       " Simplex(('JV', 'MB', 'ME', 'MY')),\n",
+       " Simplex(('BA', 'CR', 'EN', 'GA', 'HL')),\n",
+       " Simplex(('BB', 'BJ', 'GA', 'GU', 'TH')),\n",
+       " Simplex(('BB', 'GU', 'JA', 'MO', 'QU')),\n",
+       " Simplex(('CO', 'GI', 'JV', 'MA', 'MG')),\n",
+       " Simplex(('BA', 'BO', 'CM', 'GA', 'JO', 'MA')),\n",
+       " Simplex(('BB', 'GU', 'JV', 'QU', 'TH', 'TM')),\n",
+       " Simplex(('BO', 'CM', 'CR', 'EN', 'GA', 'MA')),\n",
+       " Simplex(('BB', 'BJ', 'EP', 'GU', 'MO', 'QU', 'TH')),\n",
+       " Simplex(('BM', 'BR', 'CC', 'CH', 'CN', 'JU', 'JV')),\n",
+       " Simplex(('BO', 'CM', 'CR', 'EN', 'FE', 'JO', 'MA')),\n",
+       " Simplex(('BA', 'BO', 'CM', 'CR', 'EN', 'FE', 'JO', 'JP')),\n",
+       " Simplex(('BL', 'DA', 'FA', 'FN', 'FT', 'FV', 'LI', 'ZE')),\n",
+       " Simplex(('BA', 'BO', 'CM', 'CR', 'EN', 'FE', 'GA', 'JO', 'MM')),\n",
+       " Simplex(('BA', 'BO', 'CR', 'EN', 'FE', 'GA', 'GT', 'JO', 'JP'))]"
+      ]
+     },
+     "execution_count": 2,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "list(H.get_all_maximal_simplices())"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": ".venv",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.12.1"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}