regenerated

pporrasebi · Dec 22, 2015 · 7937844 · 7937844
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diff --git a/_config.yml b/_config.yml
@@ -898,17 +898,17 @@ ontologies:
   - {id: fix.owl, ontology_purl: 'http://purl.obolibrary.org/obo/fix.owl'}
   title: Physico-chemical methods and properties
 - contact: {email: [email protected], label: Robert Hoehndorf}
-  description: phenotypes occurring in flora files
+  description: Traits and phenotypes of flowering plants occurring in digitized Floras
   domain: phenotype
   homepage: https://github.com/flora-phenotype-ontology/flopoontology
-  id: to
+  id: flopo
   layout: ontology_detail
   license: {url: 'https://creativecommons.org/about/cc0'}
-  ontology_purl: http://purl.obolibrary.org/obo/to.owl
+  ontology_purl: http://purl.obolibrary.org/obo/flopo.owl
   products:
   - {id: flopo.owl, ontology_purl: 'http://purl.obolibrary.org/obo/flopo.owl'}
   taxon: {id: 'NCBITaxon:33090', label: Viridiplantae}
-  title: FLOPO phenotype ontology
+  title: Flora Phenotype Ontology
   tracker: https://github.com/flora-phenotype-ontology/flopoontology/issues
 - build: {method: owl2obo, source_url: 'http://purl.obolibrary.org/obo/flu.owl'}
   contact: {email: [email protected], label: Burke Squires}

diff --git a/registry/ontologies.jsonld b/registry/ontologies.jsonld
@@ -1841,15 +1841,15 @@
                 "email": "[email protected]",
                 "label": "Robert Hoehndorf"
             },
-            "description": "phenotypes occurring in flora files",
+            "description": "Traits and phenotypes of flowering plants occurring in digitized Floras",
             "domain": "phenotype",
             "homepage": "https://github.com/flora-phenotype-ontology/flopoontology",
-            "id": "to",
+            "id": "flopo",
             "layout": "ontology_detail",
             "license": {
                 "url": "https://creativecommons.org/about/cc0"
             },
-            "ontology_purl": "http://purl.obolibrary.org/obo/to.owl",
+            "ontology_purl": "http://purl.obolibrary.org/obo/flopo.owl",
             "products": [
                 {
                     "id": "flopo.owl",
@@ -1860,7 +1860,7 @@
                 "id": "NCBITaxon:33090",
                 "label": "Viridiplantae"
             },
-            "title": "FLOPO phenotype ontology",
+            "title": "Flora Phenotype Ontology",
             "tracker": "https://github.com/flora-phenotype-ontology/flopoontology/issues"
         },
         {

diff --git a/registry/ontologies.ttl b/registry/ontologies.ttl
@@ -846,6 +846,10 @@
         <http://www.w3.org/ns/dcat#accessURL>
                 "http://purl.obolibrary.org/obo/envo.owl" .
 
+<http://purl.obolibrary.org/obo/pr.owl>
+        <http://www.w3.org/ns/dcat#accessURL>
+                "http://purl.obolibrary.org/obo/pr.owl" .
+
 <http://purl.obolibrary.org/obo/ypo>
         <http://purl.obolibrary.org/obo/IAO_0000136>
                 <http://purl.obolibrary.org/obo/NCBITaxon_4932> ;
@@ -860,10 +864,6 @@
         <http://xmlns.com/foaf/0.1/homepage>
                 <http://www.yeastgenome.org/> .
 
-<http://purl.obolibrary.org/obo/pr.owl>
-        <http://www.w3.org/ns/dcat#accessURL>
-                "http://purl.obolibrary.org/obo/pr.owl" .
-
 <http://purl.obolibrary.org/obo/pao>
         <http://purl.obolibrary.org/obo/IAO_0000136>
                 <http://purl.obolibrary.org/obo/NCBITaxon_33090> ;
@@ -1517,6 +1517,10 @@
         <http://xmlns.com/foaf/0.1/page>
                 <https://github.com/obophenotype/developmental-stage-ontologies> .
 
+<http://purl.obolibrary.org/obo/fbdv/fbbt-simple.obo>
+        <http://www.w3.org/ns/dcat#accessURL>
+                "http://purl.obolibrary.org/obo/fbdv/fbbt-simple.obo" .
+
 <http://purl.obolibrary.org/obo/mpath>
         <http://obofoundry.github.io/vocabulary/has_build_information>
                 [ <http://obofoundry.github.io/vocabulary/method>
@@ -1549,10 +1553,6 @@
         <http://xmlns.com/foaf/0.1/homepage>
                 <http://www.pathbase.net> .
 
-<http://purl.obolibrary.org/obo/fbdv/fbbt-simple.obo>
-        <http://www.w3.org/ns/dcat#accessURL>
-                "http://purl.obolibrary.org/obo/fbdv/fbbt-simple.obo" .
-
 <http://purl.obolibrary.org/obo/mop>
         <http://obofoundry.github.io/vocabulary/has_build_information>
                 [ <http://obofoundry.github.io/vocabulary/method>
@@ -1815,14 +1815,14 @@
         <http://www.w3.org/ns/dcat#accessURL>
                 "http://purl.obolibrary.org/obo/obib.owl" .
 
-<http://purl.obolibrary.org/obo/chebi.owl>
-        <http://www.w3.org/ns/dcat#accessURL>
-                "http://purl.obolibrary.org/obo/chebi.owl" .
-
 <http://www.ncbi.nlm.nih.gov/pubmed/23220694>
         <http://purl.org/dc/elements/1.1/title>
                 "The plant ontology as a tool for comparative plant anatomy and genomic analyses." .
 
+<http://purl.obolibrary.org/obo/chebi.owl>
+        <http://www.w3.org/ns/dcat#accessURL>
+                "http://purl.obolibrary.org/obo/chebi.owl" .
+
 <http://purl.obolibrary.org/obo/hom>
         <http://obofoundry.github.io/vocabulary/has_build_information>
                 [ <http://obofoundry.github.io/vocabulary/checkout>
@@ -1899,17 +1899,17 @@
         <http://purl.obolibrary.org/obo/IAO_0000136>
                 <http://purl.obolibrary.org/obo/NCBITaxon_33090> ;
         <http://purl.org/dc/elements/1.1/description>
-                "phenotypes occurring in flora files" , "A controlled vocabulary of describe phenotypic traits in plants." ;
+                "A controlled vocabulary of describe phenotypic traits in plants." ;
         <http://purl.org/dc/elements/1.1/title>
-                "Plant Trait Ontology" , "FLOPO phenotype ontology" ;
+                "Plant Trait Ontology" ;
         <http://purl.org/dc/terms/1.1/license>
-                <https://creativecommons.org/about/cc0> , <https://creativecommons.org/licenses/by/3.0/> ;
+                <https://creativecommons.org/licenses/by/3.0/> ;
         <http://purl.org/dc/terms/1.1/publication>
                 <http://www.ncbi.nlm.nih.gov/pubmed/22847540> ;
         <http://purl.org/dc/terms/1.1/theme>
                 "phenotype" ;
         <http://usefulinc.com/ns/doap#bug-database>
-                "https://github.com/Planteome/plant-trait-ontology/issues" , "https://github.com/flora-phenotype-ontology/flopoontology/issues" ;
+                "https://github.com/Planteome/plant-trait-ontology/issues" ;
         <http://www.w3.org/ns/dcat#accessURL>
                 "http://purl.obolibrary.org/obo/to.owl" ;
         <http://www.w3.org/ns/dcat#contactPoint>
@@ -1918,16 +1918,10 @@
                   <http://xmlns.com/foaf/0.1/mbox>
                           "[email protected]"
                 ] ;
-        <http://www.w3.org/ns/dcat#contactPoint>
-                [ <http://www.w3.org/2000/01/rdf-schema#label>
-                          "Robert Hoehndorf" ;
-                  <http://xmlns.com/foaf/0.1/mbox>
-                          "[email protected]"
-                ] ;
         <http://www.w3.org/ns/dcat#distribution>
-                <http://purl.obolibrary.org/obo/to.owl> , <http://purl.obolibrary.org/obo/to.obo> , <http://purl.obolibrary.org/obo/flopo.owl> ;
+                <http://purl.obolibrary.org/obo/to.owl> , <http://purl.obolibrary.org/obo/to.obo> ;
         <http://xmlns.com/foaf/0.1/homepage>
-                <https://github.com/flora-phenotype-ontology/flopoontology> , <http://planteome.org> ;
+                <http://planteome.org> ;
         <http://xmlns.com/foaf/0.1/page>
                 <http://planteome.org/amigo/cgi-bin/crop_amigo/term_details?term=TO:0000387&session_id=815amigo1442021959> .
 
@@ -3066,12 +3060,6 @@
         <http://xmlns.com/foaf/0.1/homepage>
                 <https://code.google.com/p/cvdo/> .
 
-<http://flybase.org/.bin/cvreport.html?cvterm=FBbt:10000000>
-        <http://www.w3.org/2000/01/rdf-schema#label>
-                "FB" ;
-        <http://purl.org/dc/elements/1.1/title>
-                "FlyBase Browser" .
-
 <http://purl.obolibrary.org/obo/omp>
         <http://obofoundry.github.io/vocabulary/has_build_information>
                 [ <http://obofoundry.github.io/vocabulary/method>
@@ -3098,6 +3086,12 @@
         <http://xmlns.com/foaf/0.1/homepage>
                 <http://microbialphenotypes.org> .
 
+<http://flybase.org/.bin/cvreport.html?cvterm=FBbt:10000000>
+        <http://www.w3.org/2000/01/rdf-schema#label>
+                "FB" ;
+        <http://purl.org/dc/elements/1.1/title>
+                "FlyBase Browser" .
+
 <http://purl.obolibrary.org/obo/ceph.owl>
         <http://www.w3.org/ns/dcat#accessURL>
                 "http://purl.obolibrary.org/obo/ceph.owl" .
@@ -3424,34 +3418,6 @@
         <http://www.w3.org/ns/dcat#accessURL>
                 "http://purl.obolibrary.org/obo/tgma.owl" .
 
-<http://purl.obolibrary.org/obo/miro>
-        <http://obofoundry.github.io/vocabulary/has_build_information>
-                [ <http://obofoundry.github.io/vocabulary/method>
-                          "obo2owl" ;
-                  <http://obofoundry.github.io/vocabulary/source_url>
-                          "http://anobase.vectorbase.org/miro/miro_release.obo"
-                ] ;
-        <http://purl.obolibrary.org/obo/IAO_0000136>
-                <http://purl.obolibrary.org/obo/NCBITaxon_44484> ;
-        <http://purl.org/dc/elements/1.1/description>
-                "Application ontology for entities related to insecticide resistance in mosquitos" ;
-        <http://purl.org/dc/elements/1.1/title>
-                "Mosquito insecticide resistance" ;
-        <http://purl.org/dc/terms/1.1/theme>
-                "environment" ;
-        <http://www.w3.org/ns/dcat#accessURL>
-                "http://purl.obolibrary.org/obo/miro.owl" ;
-        <http://www.w3.org/ns/dcat#contactPoint>
-                [ <http://www.w3.org/2000/01/rdf-schema#label>
-                          "C. Louis" ;
-                  <http://xmlns.com/foaf/0.1/mbox>
-                          "[email protected]"
-                ] ;
-        <http://www.w3.org/ns/dcat#distribution>
-                <http://purl.obolibrary.org/obo/miro.owl> ;
-        <http://xmlns.com/foaf/0.1/homepage>
-                <http://anobase.vectorbase.org> .
-
 <http://purl.obolibrary.org/obo/xao>
         <http://obofoundry.github.io/vocabulary/has_build_information>
                 [ <http://obofoundry.github.io/vocabulary/method>
@@ -3480,6 +3446,34 @@
         <http://xmlns.com/foaf/0.1/homepage>
                 <http://www.xenbase.org/anatomy/xao.do?method=display> .
 
+<http://purl.obolibrary.org/obo/miro>
+        <http://obofoundry.github.io/vocabulary/has_build_information>
+                [ <http://obofoundry.github.io/vocabulary/method>
+                          "obo2owl" ;
+                  <http://obofoundry.github.io/vocabulary/source_url>
+                          "http://anobase.vectorbase.org/miro/miro_release.obo"
+                ] ;
+        <http://purl.obolibrary.org/obo/IAO_0000136>
+                <http://purl.obolibrary.org/obo/NCBITaxon_44484> ;
+        <http://purl.org/dc/elements/1.1/description>
+                "Application ontology for entities related to insecticide resistance in mosquitos" ;
+        <http://purl.org/dc/elements/1.1/title>
+                "Mosquito insecticide resistance" ;
+        <http://purl.org/dc/terms/1.1/theme>
+                "environment" ;
+        <http://www.w3.org/ns/dcat#accessURL>
+                "http://purl.obolibrary.org/obo/miro.owl" ;
+        <http://www.w3.org/ns/dcat#contactPoint>
+                [ <http://www.w3.org/2000/01/rdf-schema#label>
+                          "C. Louis" ;
+                  <http://xmlns.com/foaf/0.1/mbox>
+                          "[email protected]"
+                ] ;
+        <http://www.w3.org/ns/dcat#distribution>
+                <http://purl.obolibrary.org/obo/miro.owl> ;
+        <http://xmlns.com/foaf/0.1/homepage>
+                <http://anobase.vectorbase.org> .
+
 <http://purl.obolibrary.org/obo/ogg>
         <http://purl.org/dc/elements/1.1/description>
                 "A formal ontology of genes and genomes of biological organisms." ;
@@ -4269,6 +4263,32 @@
         <http://purl.org/dc/elements/1.1/title>
                 "BioPortal Browser" .
 
+<http://purl.obolibrary.org/obo/flopo>
+        <http://purl.obolibrary.org/obo/IAO_0000136>
+                <http://purl.obolibrary.org/obo/NCBITaxon_33090> ;
+        <http://purl.org/dc/elements/1.1/description>
+                "Traits and phenotypes of flowering plants occurring in digitized Floras" ;
+        <http://purl.org/dc/elements/1.1/title>
+                "Flora Phenotype Ontology" ;
+        <http://purl.org/dc/terms/1.1/license>
+                <https://creativecommons.org/about/cc0> ;
+        <http://purl.org/dc/terms/1.1/theme>
+                "phenotype" ;
+        <http://usefulinc.com/ns/doap#bug-database>
+                "https://github.com/flora-phenotype-ontology/flopoontology/issues" ;
+        <http://www.w3.org/ns/dcat#accessURL>
+                "http://purl.obolibrary.org/obo/flopo.owl" ;
+        <http://www.w3.org/ns/dcat#contactPoint>
+                [ <http://www.w3.org/2000/01/rdf-schema#label>
+                          "Robert Hoehndorf" ;
+                  <http://xmlns.com/foaf/0.1/mbox>
+                          "[email protected]"
+                ] ;
+        <http://www.w3.org/ns/dcat#distribution>
+                <http://purl.obolibrary.org/obo/flopo.owl> ;
+        <http://xmlns.com/foaf/0.1/homepage>
+                <https://github.com/flora-phenotype-ontology/flopoontology> .
+
 <http://purl.obolibrary.org/obo/omit.owl>
         <http://www.w3.org/ns/dcat#accessURL>
                 "http://purl.obolibrary.org/obo/omit.owl" .
@@ -4737,6 +4757,10 @@
         <http://www.w3.org/2000/01/rdf-schema#label>
                 "Amphibia" .
 
+<http://www.ncbi.nlm.nih.gov/pubmed/21478484>
+        <http://purl.org/dc/elements/1.1/title>
+                "The Rat Genome Database pathway portal." .
+
 <http://purl.obolibrary.org/obo/vo.owl>
         <http://www.w3.org/ns/dcat#accessURL>
                 "http://purl.obolibrary.org/obo/vo.owl" .
@@ -4745,10 +4769,6 @@
         <http://www.w3.org/2000/01/rdf-schema#label>
                 "S. pombe" .
 
-<http://www.ncbi.nlm.nih.gov/pubmed/21478484>
-        <http://purl.org/dc/elements/1.1/title>
-                "The Rat Genome Database pathway portal." .
-
 <http://purl.obolibrary.org/obo/emapa>
         <http://obofoundry.github.io/vocabulary/has_build_information>
                 [ <http://obofoundry.github.io/vocabulary/method>
@@ -4901,17 +4921,17 @@
         <http://xmlns.com/foaf/0.1/homepage>
                 <http://www-igbmc.u-strasbg.fr/BioInfo/MAO/mao.html> .
 
-<http://purl.obolibrary.org/obo/ehdaa2.owl>
-        <http://www.w3.org/ns/dcat#accessURL>
-                "http://purl.obolibrary.org/obo/ehdaa2.owl" .
+<http://www.ncbi.nlm.nih.gov/pubmed/18950739>
+        <http://purl.org/dc/elements/1.1/title>
+                "The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease." .
 
 <http://purl.obolibrary.org/obo/bfo.owl>
         <http://www.w3.org/ns/dcat#accessURL>
                 "http://purl.obolibrary.org/obo/bfo.owl" .
 
-<http://www.ncbi.nlm.nih.gov/pubmed/18950739>
-        <http://purl.org/dc/elements/1.1/title>
-                "The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease." .
+<http://purl.obolibrary.org/obo/ehdaa2.owl>
+        <http://www.w3.org/ns/dcat#accessURL>
+                "http://purl.obolibrary.org/obo/ehdaa2.owl" .
 
 <http://purl.obolibrary.org/obo/omrse>
         <http://obofoundry.github.io/vocabulary/has_build_information>

diff --git a/registry/ontologies.yml b/registry/ontologies.yml
@@ -890,17 +890,17 @@ ontologies:
   - {id: fix.owl, ontology_purl: 'http://purl.obolibrary.org/obo/fix.owl'}
   title: Physico-chemical methods and properties
 - contact: {email: [email protected], label: Robert Hoehndorf}
-  description: phenotypes occurring in flora files
+  description: Traits and phenotypes of flowering plants occurring in digitized Floras
   domain: phenotype
   homepage: https://github.com/flora-phenotype-ontology/flopoontology
-  id: to
+  id: flopo
   layout: ontology_detail
   license: {url: 'https://creativecommons.org/about/cc0'}
-  ontology_purl: http://purl.obolibrary.org/obo/to.owl
+  ontology_purl: http://purl.obolibrary.org/obo/flopo.owl
   products:
   - {id: flopo.owl, ontology_purl: 'http://purl.obolibrary.org/obo/flopo.owl'}
   taxon: {id: 'NCBITaxon:33090', label: Viridiplantae}
-  title: FLOPO phenotype ontology
+  title: Flora Phenotype Ontology
   tracker: https://github.com/flora-phenotype-ontology/flopoontology/issues
 - build: {method: owl2obo, source_url: 'http://purl.obolibrary.org/obo/flu.owl'}
   contact: {email: [email protected], label: Burke Squires}