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Update README.md
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vigji authored Jun 29, 2021
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Expand Up @@ -4,5 +4,5 @@ This repository contains the Python and MATLAB scripts that have been used to pr
The repo is organized in the following subfolders:
- stytra_scripts: scripts to run all the behavioral and imaging experiments, based on [the Stytra library](https://github.com/portugueslab/stytra), and they provide a self-contained description of the behavioral paradigms described in the paper. To test them, you can refer to [the Stytra documentation](http://www.portugueslab.com/stytra/) for software installation and a description of the hardware. These protocols were run using the [0.8.5 Stytra version](https://github.com/portugueslab/stytra/commit/28171789a576f835021d4e0314ac923092aa3acc).
- imaging_preprocessing: python notebooks and scripts to run all the preprocessing of the imaging data, using either the [fimpy library](https://github.com/portugueslab/fimpy) or the [suite2p library](https://suite2p.readthedocs.io/en/latest/).
- behavior_analysis: MATLAB code for analysing the behavioral data;
- imaging_analysis: MATLAB code for analysing the imaging data
- behavior_analysis: MATLAB code for analysing the behavioral data.
- imaging_analysis: MATLAB code for analysing the imaging data.

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