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# [Choice] R version: 4, 4.2, 4.1, 4.0 | ||
ARG VARIANT=4 | ||
# [Choice] Base image. Minimal (r-ver), tidyverse installed (tidyverse), or full image (binder): rocker/r-ver, rocker/tidyverse, rocker/binder | ||
ARG BASE_IMAGE=rocker/r-ver | ||
FROM ${BASE_IMAGE}:${VARIANT} | ||
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# [Option] Install zsh | ||
ARG INSTALL_ZSH="true" | ||
# [Option] Upgrade OS packages to their latest versions | ||
ARG UPGRADE_PACKAGES="false" | ||
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# Install needed packages and setup non-root user. Use a separate RUN statement to add your own dependencies. | ||
ARG USERNAME=rstudio | ||
ARG USER_UID=1000 | ||
ARG USER_GID=$USER_UID | ||
USER root | ||
COPY library-scripts/*.sh /tmp/library-scripts/ | ||
RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \ | ||
&& /bin/bash /tmp/library-scripts/common-debian.sh "${INSTALL_ZSH}" "${USERNAME}" "${USER_UID}" "${USER_GID}" "${UPGRADE_PACKAGES}" "true" "true" \ | ||
&& usermod -a -G staff ${USERNAME} \ | ||
&& apt-get -y install \ | ||
python3-pip \ | ||
libgit2-dev \ | ||
libcurl4-openssl-dev \ | ||
libssl-dev \ | ||
libxml2-dev \ | ||
libxt-dev \ | ||
libfontconfig1-dev \ | ||
libcairo2-dev \ | ||
&& apt-get autoremove -y && apt-get clean -y && rm -rf /var/lib/apt/lists/* /tmp/library-scripts \ | ||
&& python3 -m pip --no-cache-dir install radian \ | ||
&& install2.r --error --skipinstalled --ncpus -1 \ | ||
devtools \ | ||
languageserver \ | ||
httpgd \ | ||
shiny \ | ||
ggplot2 \ | ||
data.table \ | ||
dplyr \ | ||
shinycssloaders \ | ||
DT \ | ||
officer \ | ||
flextable \ | ||
ggiraph \ | ||
patchwork \ | ||
RSQLite \ | ||
htmltools \ | ||
shinyjs \ | ||
RColorBrewer \ | ||
stringr \ | ||
shinytest2 \ | ||
shinyvalidate \ | ||
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&& rm -rf /tmp/downloaded_packages | ||
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# VSCode R Debugger dependency. Install the latest release version from GitHub without using GitHub API. | ||
# See https://github.com/microsoft/vscode-dev-containers/issues/1032 | ||
RUN export TAG=$(git ls-remote --tags --refs --sort='version:refname' https://github.com/ManuelHentschel/vscDebugger v\* | tail -n 1 | cut --delimiter='/' --fields=3) \ | ||
&& Rscript -e "remotes::install_git('https://github.com/ManuelHentschel/vscDebugger.git', ref = '"${TAG}"', dependencies = FALSE)" | ||
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# R Session watcher settings. | ||
# See more details: https://github.com/REditorSupport/vscode-R/wiki/R-Session-watcher | ||
RUN echo 'if (interactive() && Sys.getenv("TERM_PROGRAM") == "vscode") source(file.path(Sys.getenv("HOME"), ".vscode-R", "init.R"))' >>"${R_HOME}/etc/Rprofile.site" | ||
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# [Option] Enable vscode-jupyter support | ||
ARG ENABLE_JUPYTER="false" | ||
RUN if [ "${ENABLE_JUPYTER}" = "true" ]; then \ | ||
if [ -z "$(dpkg --get-selections | grep libzmq3-dev)" ]; then \ | ||
apt-get update \ | ||
&& export DEBIAN_FRONTEND=noninteractive \ | ||
&& apt-get -y install --no-install-recommends libzmq3-dev \ | ||
&& apt-get autoremove -y && apt-get clean -y && rm -rf /var/lib/apt/lists/*; \ | ||
fi \ | ||
&& install2.r --error --skipinstalled --ncpus -1 IRkernel \ | ||
&& rm -rf /tmp/downloaded_packages \ | ||
&& python3 -m pip --no-cache-dir install jupyter \ | ||
&& R --vanilla -s -e 'IRkernel::installspec(user = FALSE)'; \ | ||
fi | ||
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# [Optional] Uncomment this section to install additional OS packages. | ||
# RUN apt-get update \ | ||
# && export DEBIAN_FRONTEND=noninteractive \ | ||
# && apt-get -y install --no-install-recommends <your-package-list-here> | ||
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# [Optional] Uncomment this section to install additional R packages. | ||
# RUN install2.r --error --skipinstalled --ncpus -1 <your-package-list-here> |
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// For format details, see https://aka.ms/devcontainer.json. For config options, see the README at: | ||
// https://github.com/microsoft/vscode-dev-containers/tree/v0.245.0/containers/r | ||
{ | ||
"name": "R (Community)", | ||
"build": { | ||
"dockerfile": "Dockerfile", | ||
"args": { | ||
// Update VARIANT to pick a R version: 4, 4.2, 4.1, 4.0 | ||
"VARIANT": "4.1", | ||
// Start with a minimal image (rocker/r-ver) or a expanded image. | ||
// See more details about rocker/r-ver's derived images: https://github.com/rocker-org/rocker-versioned2 | ||
"BASE_IMAGE": "rocker/r-ver", | ||
// Options | ||
"ENABLE_JUPYTER": "false", | ||
"UPGRADE_PACKAGES": "true" | ||
} | ||
}, | ||
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// Configure tool-specific properties. | ||
"customizations": { | ||
// Configure properties specific to VS Code. | ||
"vscode": { | ||
// Set *default* container specific settings.json values on container create. | ||
"settings": { | ||
"r.rterm.linux": "/usr/local/bin/radian", | ||
"r.bracketedPaste": true, | ||
"r.plot.useHttpgd": true, | ||
"[r]": { | ||
"editor.wordSeparators": "`~!@#%$^&*()-=+[{]}\\|;:'\",<>/?" | ||
} | ||
}, | ||
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// Add the IDs of extensions you want installed when the container is created. | ||
"extensions": [ | ||
"reditorsupport.r", | ||
"rdebugger.r-debugger" | ||
] | ||
} | ||
}, | ||
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// Use 'forwardPorts' to make a list of ports inside the container available locally. | ||
// "forwardPorts": [], | ||
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// Use 'postCreateCommand' to run commands after the container is created. | ||
// "postCreateCommand": "R --version", | ||
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// Comment out to connect as root instead. More info: https://aka.ms/vscode-remote/containers/non-root. | ||
"remoteUser": "rstudio" | ||
} |
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