jazzPanda: A hybrid approach to find spatially relevant marker genes

in image-based spatial transcriptomics data

Explore the vignette »

Introduction

The jazzPanda package contains functions to find marker genes based on the spatial coordinates for imaging-based spatial transcriptomics technologies including 10x Xenium, NanoString CosMx and Vizgen MERSCOPE.

Installation

To install jazzPanda from Bioconductor, use the following commands:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("jazzPanda")

To install jazzPanda from github, use the following commands:

library(devtools)
devtools::install_github("phipsonlab/jazzPanda")

In order to view the vignette for jazzPanda use the following command:

browseVignettes("jazzPanda")