Added a Channel Operator to Manually Load Sample IDs from a nf-validation-style Samplesheet #21
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Adds the
loadIridaSampleIds()
function which will manually load sample IDs into the set of valid sample IDs, thereby fixing a problem where certain workflows didn't automatically load sample IDs due to transformations and workflow design.The channel operator outputs the input with no changes to the channel. However, it scans for
meta.id
s and adds them to the plugin's list of valid sample IDs.See the updated README section for a more detailed description.