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Updated readme with test repo info for plugin
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apetkau committed Jan 22, 2024
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Expand Up @@ -7,7 +7,7 @@ This project contains a plugin for integrating Nextflow pipelines with [IRIDA Ne
Until this plugin is stable and fully released to test out you will have to set the following environment variable:

```bash
export NXF_PLUGINS_TEST_REPOSITORY="https://github.com/phac-nml/nf-iridanext/releases/download/0.1.0/nf-iridanext-0.1.0-meta.json"
export NXF_PLUGINS_TEST_REPOSITORY="https://github.com/phac-nml/nf-iridanext/releases/download/0.2.0/nf-iridanext-0.2.0-meta.json"
```

Once this is set, the following are example Nextflow configurations that can be used.
Expand Down Expand Up @@ -435,7 +435,7 @@ One use case of this plugin is to structure reads and metadata downloaded from N

```bash
# Tell Nextflow where to get plugin since it's not part of Nextflow plugins index yet
export NXF_PLUGINS_TEST_REPOSITORY="https://github.com/phac-nml/nf-iridanext/releases/download/0.1.0/nf-iridanext-0.1.0-meta.json"
export NXF_PLUGINS_TEST_REPOSITORY="https://github.com/phac-nml/nf-iridanext/releases/download/0.2.0/nf-iridanext-0.2.0-meta.json"

# Download config and SRA accessions
wget https://raw.githubusercontent.com/phac-nml/nf-iridanext/main/docs/examples/fetchngs/fetchngs.conf
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