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Removed docker quay.io tags #19

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merged 2 commits into from
Aug 19, 2024
Merged

Removed docker quay.io tags #19

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becea8d
removed docker tags from container closures
kylacochrane Aug 15, 2024
5dfde61
Updated CHANGELOG.md
kylacochrane Aug 16, 2024
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6 changes: 6 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -3,6 +3,12 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## Unreleased

### `Changed`

- Removed `quay.io` docker repository tags from modules [PR19](https://github.com/phac-nml/gasnomenclature/pull/19)

## [0.1.0] - 2024/06/28

Initial release of the Genomic Address Nomenclature pipeline to be used to assign cluster addresses to samples based on an existing cluster designations.
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2 changes: 1 addition & 1 deletion modules/local/gas/call/main.nf
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Expand Up @@ -6,7 +6,7 @@ process GAS_CALL{

container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/genomic_address_service%3A0.1.1--pyh7cba7a3_1' :
'quay.io/biocontainers/genomic_address_service:0.1.1--pyh7cba7a3_1' }"
'biocontainers/genomic_address_service:0.1.1--pyh7cba7a3_1' }"


input:
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2 changes: 1 addition & 1 deletion modules/local/locidex/merge/main.nf
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Expand Up @@ -6,7 +6,7 @@ process LOCIDEX_MERGE {

container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/locidex:0.1.1--pyhdfd78af_0' :
'quay.io/biocontainers/locidex:0.1.1--pyhdfd78af_0' }"
'biocontainers/locidex:0.1.1--pyhdfd78af_0' }"

input:
path input_values // [file(sample1), file(sample2), file(sample3), etc...]
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2 changes: 1 addition & 1 deletion modules/local/profile_dists/main.nf
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Expand Up @@ -4,7 +4,7 @@ process PROFILE_DISTS{

container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/profile_dists%3A1.0.0--pyh7cba7a3_0' :
'quay.io/biocontainers/profile_dists:1.0.0--pyh7cba7a3_0' }"
'biocontainers/profile_dists:1.0.0--pyh7cba7a3_0' }"

input:
path query
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