Merge pull request #5 from phac-nml/fix-prepFilePaths

Update gas_nomenclature.nf
phac-nml · Apr 5, 2024 · f249833 · f249833
2 parents dccc794 + be8a632
commit f249833
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/gas_nomenclature.nf b/workflows/gas_nomenclature.nf
@@ -53,7 +53,7 @@ def prepareFilePath(String filep, GString debug_msg){
     // Rerturns null if a file is not valid
     def return_path = null
     if(filep){
-        file_in = path(filep)
+        file_in = file(filep)
         if(file_in.exists()){
             return_path = file_in
             log.debug debug_msg