Updated GAS to 0.1.4

phac-nml · Feb 4, 2025 · 2921a96 · 2921a96
1 parent 3850e90
commit 2921a96
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Showing 4 changed files with 5 additions and 5 deletions.
diff --git a/modules/local/gas/call/main.nf b/modules/local/gas/call/main.nf
@@ -5,8 +5,8 @@ process GAS_CALL{
     tag "Assigning Nomenclature"
 
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/genomic_address_service%3A0.1.3--pyh7e72e81_0' :
-        'biocontainers/genomic_address_service:0.1.3--pyh7e72e81_0' }"
+        'https://depot.galaxyproject.org/singularity/genomic_address_service%3A0.1.4--pyh7e72e81_0' :
+        'biocontainers/genomic_address_service:0.1.4--pyh7e72e81_0' }"
 
     input:
     path(reference_clusters)

diff --git a/tests/data/called/expected_results_missing.txt b/tests/data/called/expected_results_missing.txt
@@ -2,4 +2,4 @@ id	address
 sample1	1
 sample2	1
 sample3	2
-sampleQ	3
+sampleQ	1
diff --git a/tests/data/irida/missing_iridanext.output.json b/tests/data/irida/missing_iridanext.output.json
@@ -6,7 +6,7 @@
     "metadata": {
         "samples": {
             "sampleQ": {
-                "address": "3"
+                "address": "1"
             }
         }
     }

diff --git a/tests/pipelines/main_missing_alleles.nf.test b/tests/pipelines/main_missing_alleles.nf.test
@@ -52,7 +52,7 @@ nextflow_pipeline {
             def iridanext_metadata = iridanext_json.metadata.samples
 
             assert iridanext_metadata.size() == 1 && iridanext_metadata.containsKey("sampleQ")
-            assert iridanext_metadata.sampleQ."address" == "3"
+            assert iridanext_metadata.sampleQ."address" == "1"
         }
     }